BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911743
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74960.2 | Symbols: FAB1, KAS2 | fatty acid biosynthesis 1 |... 1319 0.0
> AT1G74960.2 | Symbols: FAB1, KAS2 | fatty acid biosynthesis 1
| chr1:28151978-28156259 REVERSE LENGTH=2285
Length=2285
Score = 1319 bits (714), Expect = 0.0
Identities = 995/1133 (88%), Gaps = 10/1133 (1%)
Strand=Plus/Plus
Query 322 TTTGATTGCTCTGCATTTCCTACTAGAATCGCTGGAGAAATTAAATCCTTTTCGACCGAA 381
|||||||| |||| ||||||||| |||| || ||||| || ||| ||| ||||| |||
Sbjct 810 TTTGATTGTTCTGAATTTCCTACGCGAATTGCGGGAGAGATCAAAAGCTTCTCGACTGAA 869
Query 382 GGATTGGTTGCTCTAAAACTTTCGAAAAGAATGGACAAATTCATGCTTTATCTTCTTACC 441
|||| |||||||| ||||||||| ||||| ||||||||||||||||| |||||||| ||
Sbjct 870 GGATGGGTTGCTCCAAAACTTTCTAAAAGGATGGACAAATTCATGCTCTATCTTCTCACA 929
Query 442 GCTGGTAAGAAAGCGTTGGCTGATGGTGGAGTAACTGAGGATGTAATGGCAGAGTTAGAC 501
|||||||||||||| |||||||||||||| || ||||| || |||||||||||||| |||
Sbjct 930 GCTGGTAAGAAAGCTTTGGCTGATGGTGGGGTTACTGATGAAGTAATGGCAGAGTTTGAC 989
Query 502 AAATCCAGATGTGGAGTTTTGATTGGCTCAGCTATGAGAGGCATGAAGATCTTTTATGAT 561
||| ||| ||||||||||||||||||||| || ||| |||| |||||| ||||||| |||
Sbjct 990 AAAACCAAATGTGGAGTTTTGATTGGCTCGGCAATGGGAGGAATGAAGGTCTTTTACGAT 1049
Query 562 GCGCTTGAAGCTTTGAAAATCTCTTACAAGAAGATGAATCCTTTTTGTGTACCTTTTGCG 621
|| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 GCTATTGAAGCTCTGAGAATCTCTTACAAGAAGATGAATCCTTTTTGTGTACCTTTTGCG 1109
Query 622 ACGACAAACATGGGATCCGCTATGCTTGCCATAGATCTGGGATGGATGGGTCCAAACTAC 681
|| ||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1110 ACAACAAACATGGGTTCTGCTATGCTTGCCATGGATCTGGGATGGATGGGGCCAAACTAT 1169
Query 682 TCTATTTCAACTGCATGTGCCACTGGAAACTTCTGTATTTTGAATGCGGCAAACCACATT 741
|||||||||||||| |||||||| | ||||| || ||| ||||| | ||||||||||||
Sbjct 1170 TCTATTTCAACTGCTTGTGCCACAAGCAACTTTTGCATTCTGAATTCAGCAAACCACATT 1229
Query 742 ATTAGAGGTGAAGCTGATGTAATGCTCTGTGGTGGCTCTGATTCAGTTATTATTCCAATA 801
|||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1230 ATTAAAGGTGAAGCTGATGTAATGCTCTGTGGTGGCTCAGATGCAGTTATTATTCCAATA 1289
Query 802 GGGTTGGGAGGTTTTGTTGCTTGTCGTGCTCTTTCACAACAG-AATGACGATCCCACCAA 860
|||||||||||||||||||| || || |||||||||||| || ||| | |||||||| ||
Sbjct 1290 GGGTTGGGAGGTTTTGTTGCATGCCGGGCTCTTTCACAA-AGGAATAATGATCCCACAAA 1348
Query 861 AGCTTCACGTCCTTGGGATAGTAATCGGGATGGTTTCTTCATGGGAGAGGGAGTTGGAGT 920
|||||||||||||||||||| ||||| ||||||||| | ||||||||||||| ||||||
Sbjct 1349 AGCTTCACGTCCTTGGGATACCAATCGAGATGGTTTCGTGATGGGAGAGGGAGCTGGAGT 1408
Query 921 TCTGCTTTTAGAAGAACTTGAGCATGCCAAGAAAAGAGGAGCAACTATATACGCGGAGTT 980
||| ||||| |||||||| |||||||| ||||||||||| |||||||| ||||| |||||
Sbjct 1409 TCTACTTTTGGAAGAACTCGAGCATGCTAAGAAAAGAGGTGCAACTATCTACGCAGAGTT 1468
Query 981 CCTTGGTGGTAGTTTCACATCTGATGCATATCATATAACTGAACCACGTCCTGATGGTGC 1040
||| ||||| |||||||||| |||||| ||||| || || || || | |||||||| ||
Sbjct 1469 CCTCGGTGGGAGTTTCACATGTGATGCCTATCACATGACCGAGCCTCACCCTGATGGGGC 1528
Query 1041 TGGTGTCATTCTCTGTATCGAGAAAACACTT-GCTCAC-GCCGGGATTTCTAAGGAAGAC 1098
|||||| ||||||||||| |||| | | || ||| | || |||||||| |||||| |
Sbjct 1529 TGGTGTTATTCTCTGTATTGAGAGAGCG-TTAGCT-AGTGCTGGGATTTCCAAGGAACAA 1586
Query 1099 ATAAATTACATAAATGCTCATGCTACCTCTACACCA-GCTGGAGACCTTAAGGAGTACCA 1157
||||||||||||||||| ||||| ||||| || | | |||||||| ||||||| |||||
Sbjct 1587 ATAAATTACATAAATGCACATGCAACCTCAACGC-ATGCTGGAGATATTAAGGAATACCA 1645
Query 1158 AGCCTTTGCTCACTGTTTTGGCCAAAATCCAGAGCT-AAGAATAAACTCAACAAAATCTA 1216
|||| ||||||||||||||||||||||||| ||||| ||| |||| || ||||||||||
Sbjct 1646 AGCCCTTGCTCACTGTTTTGGCCAAAATCCTGAGCTTAAGG-TAAATTCCACAAAATCTA 1704
Query 1217 TGATCGGACACTTGCTGGGAGCTGCTGGGGCCGTGGAGGCTGTTGCAACCATTCAGGCAA 1276
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 1705 TGATTGGACACTTGCTGGGAGCTGCTGGGGCCGTGGAGGCTGTTGCAACTGTGCAGGCGA 1764
Query 1277 TAAAAACAGGATGGGTTCATCCAAATATCAACCTGGAGAATCCAGACAAAGCAGTGGATA 1336
|| || |||||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 1765 TACGGACCGGATGGGTTCATCCAAATATCAACCTCGAGAATCCAGACAGTGGAGTGGATA 1824
Query 1337 CAAAGCTGCTGGTGGGTCTTAAGAAGGAGAGGCTGGATATTAAAGCAGCCTTGTCAAATT 1396
|||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1825 CAAAGCTGCTGGTGGGTCCTAAGAAGGAGAGACTGGACATTAAAGCAGCCTTGTCAAATT 1884
Query 1397 CTTTCGGGTTTGGTGGACATAACTCTAGCATCATTTTTGCTCCTTACAAATGA 1449
| |||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1885 CATTCGGGTTTGGTGGTCATAACTCCAGCATCATTTTTGCTCCTTACAAGTGA 1937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5