BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911762
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14860.1 | Symbols: atnudt18, NUDT18 | nudix hydrolase homol... 239 2e-62
AT2G01670.1 | Symbols: atnudt17, NUDT17 | nudix hydrolase homol... 95.3 4e-19
> AT1G14860.1 | Symbols: atnudt18, NUDT18 | nudix hydrolase homolog
18 | chr1:5124742-5126151 FORWARD LENGTH=1128
Length=1128
Score = 239 bits (129), Expect = 2e-62
Identities = 147/156 (94%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 1 ATGATGTGTTTGGTCTCTCGTACGGGTTGTCAATCCCAAAGATACATCAAGGGACGGCGT 60
||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||
Sbjct 252 ATGGTGTGTTTGGTCTCCCGTACGGGTCGTCAATCCCAAAGATACAACAAGGGACGGCGT 311
Query 61 AAAGTCGTTGGGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCAAT 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 312 CAAGTCGTCGGGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCGAC 371
Query 121 GAATTTGAAGTTCTTGTTATTTCATCACAAAAGGGT 156
|||||||| |||||||||||||||||||||||||||
Sbjct 372 GAATTTGAGGTTCTTGTTATTTCATCACAAAAGGGT 407
Score = 200 bits (108), Expect = 7e-51
Identities = 132/144 (92%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 226 TGGATGAAAATTGATGAAGCAAGAGAAGCTTGTAGAGATTGGTGGATGAAGGAAGCTTTA 285
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 639 TGGATGAAAGTTGATGAAGCAAGAGACGCTTGTAGAGATTGGTGGATGAAGGAAGCGTTA 698
Query 286 GATGTTTTAGTCCAGAGGCTTTATTCACCATCAGTGAAGCCTATGGAAGAAGACAAGAAC 345
|||||||| ||||| ||||||| || || |||| |||||||||||||||||||| |||||
Sbjct 699 GATGTTTTGGTCCAAAGGCTTTCTTTACTATCATTGAAGCCTATGGAAGAAGACGAGAAC 758
Query 346 ATTCCACTGATCTCTATCTGCTGA 369
|||||||||||||||||| ||||
Sbjct 759 CTTCCACTGATCTCTATCTACTGA 782
> AT2G01670.1 | Symbols: atnudt17, NUDT17 | nudix hydrolase homolog
17 | chr2:296510-298101 REVERSE LENGTH=1211
Length=1211
Score = 95.3 bits (51), Expect = 4e-19
Identities = 68/76 (89%), Gaps = 2/76 (3%)
Strand=Plus/Plus
Query 241 GAAGCAAGAGAAGCTTGTAGAGATTGGTGGATGAAGGAAGCTTTAGATGTTTTAGTCCAG 300
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 701 GAAGCAAGAGAAGCTTGTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGAG 760
Query 301 AGGCTTT-ATTCACCA 315
|| |||| || |||||
Sbjct 761 AGACTTTCAT-CACCA 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17342373405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5