BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911763
Length=2415
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14850.1 | Symbols: NUP155 | nucleoporin 155 | chr1:5116696-... 965 0.0
> AT1G14850.1 | Symbols: NUP155 | nucleoporin 155 | chr1:5116696-5123259
REVERSE LENGTH=4620
Length=4620
Score = 965 bits (522), Expect = 0.0
Identities = 586/617 (95%), Gaps = 4/617 (1%)
Strand=Plus/Plus
Query 790 CATTATCAGATGGCAGGAGGATG--TCTTTCCACCTCCTCAAGTGGAAGTGGTAGTACGA 847
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1022 CATTATCAGATGGCAGGAGGATGTATCTTTCCACCTCCTCAAGTGGAAGTGGTAGTACTA 1081
Query 848 TTAGCTTCAGTGGGTTCAACAACCACAGCCAGACTCCAAACTGTCTGAAAGTGGTTTCAA 907
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1082 TTAGCTTCAGTGGTTTCAACAACCACCGCCAGACTCCAAACTGTCTGAAAGTGGTTTCAA 1141
Query 908 CTAGGCCATCTCCTCCATTGGGTGTAGGTGTTGGACTTGGTTTTGGGGCCCCATCTATAG 967
| ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |||
Sbjct 1142 CCAGGCCATCTCCTCCATTGGGTGTTGGTGTTGGACTGGGTTTTGGGGCCGCATCTGTAG 1201
Query 968 CCGGTAGAACTCAGAATGAAGACCTCTCTATGAAAATTGAAACAGCATACTATTCTGTTG 1027
|||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1202 CCGGTAGAACTCAGAACGACGACCTATCTATGAAGATTGAAACAGCATACTATTCTGTTG 1261
Query 1028 GAACTCTTGTCCTTTCAGATTCATCGCCACCTGCTATGTCTTCTCTTCTTGTTGTTAGCA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 GAACTCTTGTCCTTTCAGATTCATCGCCACCTGCTATGTCTTCTCTTCTTGTTGTTAGCA 1321
Query 1088 GAGATTCAAGCGTGCACTCTCAGGTTGGCAGCAGTTCAGGGCCAAGTTCAAGGAGTTCTC 1147
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1322 GAGATTCAAGCGTGCACTCTCAGGCTGGCAGCAGTTCAGGGCCAAGTTCAAGGAGTTCTC 1381
Query 1148 GGGCTTTACGAGAAGTTTTGTCCTCCATTCCTATTGAAGGACGTATGCTTTTTGTTGCAG 1207
||||||||||||||||| |||| ||| ||||||||||||| |||||||||||||| ||||
Sbjct 1382 GGGCTTTACGAGAAGTTGTGTCTTCCCTTCCTATTGAAGGCCGTATGCTTTTTGTAGCAG 1441
Query 1208 ATGTGCTCCCCTCTCCTGATACTGCTGCTACTGTCCAATCATTATATTCAGAACTAGAAT 1267
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1442 ATGTGCTCCCCTCTCCTGATACTGCTGCTACTATTCAATCATTATATTCAGAACTAGAAT 1501
Query 1268 ACTGTGGAATCGAAGTCTCTGGAGAATCTTATGAAAAGGCATGTGGAAAACTCTGGGCCA 1327
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1502 ACTGTGGTGTCGAAGTCTCCGGAGAATCTTATGAAAAGGCATGTGGAAAACTCTGGGCGA 1561
Query 1328 GAGGTGATCTTTCGACCCAGCATATTTTGCCAAGAAGAAAGATTGTTTGTTTT-ACCACC 1386
|| |||||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 1562 GAAGTGATCTTTCAACCCAGCATATTTTGCCAAGGAGAAAGATTGTT-GTTTTTACCACC 1620
Query 1387 ATGGGTATGATGGAACT 1403
|||||||||||||||||
Sbjct 1621 ATGGGTATGATGGAACT 1637
Score = 870 bits (471), Expect = 0.0
Identities = 570/614 (93%), Gaps = 21/614 (3%)
Strand=Plus/Plus
Query 93 GCCGCCGTTGAGTGAGGTTGGTGAGACTTGGGAATTGCCTTCTGTACTCATTGAGAGGTA 152
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 GCCGCCGTTGATTGAGGTTGGTGAGACTTGGGAATTGCCTTCTGTACTCATTGAGAGGTA 221
Query 153 TAATATAGCCGGCGGGGAAGGGACGGCATCATGTGGGATTTTTCCGGAGATTCCACGGGC 212
||||| ||||||||||||||||||||| | |||||| || ||||| ||||||| ||||||
Sbjct 222 TAATACAGCCGGCGGGGAAGGGACGGCCTTATGTGGAATCTTTCCAGAGATTCGACGGGC 281
Query 213 TTGGGCATCCGTC-----TTCTTTGTTTC--T-G-G-ATGGGC---A---AT-----GTG 251
||||||||||||| ||||||||||| | | | | | | | || |||
Sbjct 282 TTGGGCATCCGTCGATAATTCTTTGTTTCTGTGGCGTTTTGACAAAAGGGATGGGCAGTG 341
Query 252 TCCTGAGTATAGTGGAGAGGAACAGGCAATTTGTGCGGTTGGTCTAGCGAAATGTAGACC 311
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 TCCTGAGTATAGTGGGGAGGAACAGGCAATTTGTGCGGTTGGTCTAGCGAAATGTAGACC 401
Query 312 TGGAGTTTTTGTTGAAGCTATTCAATATCTTTTGGTGTTGGCAACTCCTGTTGAGTTGGT 371
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 402 TGGAGTTTTTGTTGAAGCTATTCAATATCTTCTGGTGCTGGCAACTCCTGTTGAGTTGGT 461
Query 372 TCTTGTTGGAGTGTGCTGCACTGAAGGACCCGATGGTAGAGATCCTTATGCTGAAATTTC 431
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 462 TCTTGTTGGAGTGTGCTGCACTGAAGGACCTGATGGTAGAGATCCTTATGCTGAAATTTC 521
Query 432 AGTACAGCCTCTGCCCGACTATACAATATCATCAGATGGAGTGACAATGACATGCGTAAC 491
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 522 AGTACAACCTCTGCCCGACTATACAATATCATCAGATGGAGTGACAATGACATGCGTTAC 581
Query 492 ATGTACCAATAAAGGGCGCATTTTCATGGCTGGACGTGATGGTCACGTATATGAGCTGCT 551
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 582 ATGTACCAATAAAGGGCGTATTTTCATGGCTGGACGTGATGGTCACATATATGAGCTGCT 641
Query 552 ATATACAACTGGCTCAGGCTGGAATAAACGTTGTCGTAAAGTGTGCCTTACTGCAGGCGT 611
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 ATATACAACTGGCTCTGGCTGGAATAAACGTTGTCGTAAAGTGTGCCTTACTGCAGGCGT 701
Query 612 AGGTAGTATGATCTCGAGGTGGGTTGTGCCAAATGTATTCAAGTTTGGAGCTGTAGATCC 671
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 702 AGGTAGTATGATCTCAAGGTGGGTTGTTCCAAATGTATTCAAGTTTGGTGCTGTAGATCC 761
Query 672 TGTTGTAGAGATGG 685
||||||||||||||
Sbjct 762 TGTTGTAGAGATGG 775
Score = 865 bits (468), Expect = 0.0
Identities = 522/548 (95%), Gaps = 4/548 (1%)
Strand=Plus/Plus
Query 1727 AGATCTGTCTGGAAATGCTCTACTTTGCCAACTATTCTGGTGATGCTGATTCAAGTATAA 1786
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3740 AGATCTGTCTGGAAATGCTTTACTTTGCCAACTATTCTGGTGATGCTGATTCAAGTATAA 3799
Query 1787 TAAGGGAAACATGGGCTAGACTCTTTGACCAAGCTCTTTCACAAGGCGGGATAGC-TGAG 1845
||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||
Sbjct 3800 TAAGGGAAACATGGGCTAGACTCATTGACCAAGCTCTTTCACAAGGCGGAATA-CGTGAG 3858
Query 1846 GCCTGTGCAGTTCTTAAGAGAGTCGGATCTCATATATACCCTGGCGATGGAGTTGTTTTA 1905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3859 GCCTGTGCAGTTCTTAAGAGAGTCGGATCTCATATATACCCTGGCGATGGAGTTGTTTTA 3918
Query 1906 CCGCTCGATGTTTTATGCCTTCACCTCGAGAAAGCTGCACTTGAGAGATCAGAGAGGATT 1965
||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||
Sbjct 3919 CCGCTGGATGTTTTATGCCTTCACCTTGAGAGAGCTGCACTTGAGAGATCAGAAAGGATT 3978
Query 1966 GAAAATGTTAGAGATGAAGTCATAGCTAAAGCTCTTCTAGCCGCTTGCAAAGGCGCAGCT 2025
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3979 GAAAATGTTAGGGATGAAGACATAGCTAAAGCTCTTCTAGCCGCTTGCAAAGGCGCAGCT 4038
Query 2026 GAACCTGTGCTCAACGCGTATGACCGTTTATTATCCAATGCAGCCGTTGTGCCACCCCCA 2085
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 4039 GAACCTGTGCTCAACGCTTATGACCGATTATTATCCAATGCAGCTGTTGTGCCATCCCCA 4098
Query 2086 AATCCAAGAATCCTCCTCATTCATTCTGTTATAGTGGTGCTCCGTGAATGGGCAATGTCT 2145
|||| |||||||| |||| ||| ||| ||| ||||||| |||||||||||||||||||||
Sbjct 4099 AATCTAAGAATCCGCCTCCTTCGTTCAGTTCTAGTGGTACTCCGTGAATGGGCAATGTCT 4158
Query 2146 GTATTGTCAGACAGAATGGGCTCGAGTCCAACCAGGTCTTCTCTAATACTAGGCGGCTCG 2205
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 4159 GTATTGTCAGACAGAATGGGGTCGAGTCCAACCAGGTCTTCTCTGATACTAGGCGGCTCG 4218
Query 2206 TTTGCGCTAGAGAACAAAGCTGCTCTTAACCAAGGGGTC-CGTGATAAGATTGCAAACGC 2264
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 4219 TTTGCGCTAGAGAACAAAGCTGCTCTTAACCAAGGGG-CACGTGATAAGATTGCAAACGC 4277
Query 2265 TGCAAACA 2272
||||||||
Sbjct 4278 TGCAAACA 4285
Score = 254 bits (137), Expect = 4e-66
Identities = 155/163 (95%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 1404 GAAGACTTCTGGAGTCCAATTCTCCAAGGTCCCTTCTAGAAGATTTTTTCACCCGCTTTG 1463
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 GAAGACTTCTGGAATCCAACTCTCCAAGGTCCCTTCTAGAAGATTTTTTCACCCGCTTTG 1726
Query 1464 GAGCAGGCGAAGCAGCTGCCA--TG--TGATGTTGGCTGCCCGGATAATAAATTTTGAAG 1519
||| ||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct 1727 GAGTAGGCGAAGCAGCTGCCATGTGCTTGATGTTAGCTGCCCGGATAATAAATTTTGAAG 1786
Query 1520 ATTTAATTAGTAACATTGTTGCCGATAAAGCAGCTGAGGCTTT 1562
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 ATTTAATTAGTAACATTGTTGCCGATAAAGCAGCTGAGGCTTT 1829
Score = 187 bits (101), Expect = 4e-46
Identities = 103/104 (99%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 686 CTCTTAAGAAGGTGGCAGAAGAAAGGAATCTATTAAATCAGAAGGATGTGAGCCAAGGAA 745
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 863 CTCTTAAGAAGGTGGCAGAAGAAAGGAATCTATTAAATCAGAAGGATTTGAGCCAAGGAA 922
Query 746 ATCGTCAGTCAGCAGTGGCAGGTCGATCTAACAAGCCATCCATA 789
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 ATCGTCAGTCAGCAGTGGCAGGTCGATCTAACAAGCCATCCATA 966
Score = 176 bits (95), Expect = 9e-43
Identities = 106/111 (95%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 2306 GGTATATGACAGAGGTTAGGAGACTGGCTCTGCCACCGAACAAGACGGA-GAATGTATAC 2364
||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 4286 GGTATATGACAGAGGTTAGGAGACTAGCTCTGCCACCGAACAAGACGGATG-GTGTATAC 4344
Query 2365 GCAGGTTTCAAAGAACTTGACGAGTCTCTCTTAAGTCCATTCTCCTTCTGA 2415
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4345 GCAGGTTTTAAAGAACTTGACGAGTCTCTCTTAAGTCCATTCTCCTTCTGA 4395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119929102005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5