BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911766
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14820.3 | Symbols: | Sec14p-like phosphatidylinositol tran... 852 0.0
> AT1G14820.3 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr1:5105114-5106954 REVERSE LENGTH=1043
Length=1043
Score = 852 bits (461), Expect = 0.0
Identities = 596/658 (91%), Gaps = 22/658 (3%)
Strand=Plus/Plus
Query 1 ATGAGGTTCCTGGTGGCAACAAGATCAATGGACCCAGTCAAAGCAGCAAAGATGTTTGTA 60
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 255 ATGAGGTTCCTGGTGG---CAAGATCAATGGACCCAGTCAAGGCAGCAAAGATGTTTGTA 311
Query 61 GATTGGCAAAAATGGAGAGCTTCCATGGTTCCCCCAAATGG---GATCCCAGAATCGGAA 117
|||||||||||||||||||| ||||||||||| |||| ||| ||||| || || |||
Sbjct 312 GATTGGCAAAAATGGAGAGCCTCCATGGTTCCTCCAACTGGATTCATCCCTGAGTCAGAA 371
Query 118 GTGAC-GGATGAGTTGGAATTCAGAAAGATCTGTCTTCAGGGTCCAACCAATTCAGGACA 176
||| | |||||| ||||||||||||||| |||||||||||||||| ||||| || |||||
Sbjct 372 GTG-CAGGATGAATTGGAATTCAGAAAGGTCTGTCTTCAGGGTCCGACCAAATCCGGACA 430
Query 177 CCCTTTGGTGCTTGTCATAACCTCTAAGCATTTTCCTTCTAAGGATCAAAATAACCTCTC 236
||| |||||||||||||||||||||||||||||| |||||||||||| | ||| || ||
Sbjct 431 CCCATTGGTGCTTGTCATAACCTCTAAGCATTTTGCTTCTAAGGATCCAGCTAA-CT-TC 488
Query 237 -A-CAGTTCGTTGTTTATGTTCTAGACAAAACTATTGCAAGTGGCATCAAAGGCAACGAA 294
| |||| |||||||||| ||||||||||| || |||||||||| ||| ||||| |||
Sbjct 489 AAGAAGTTTGTTGTTTATGCGCTAGACAAAACAATCGCAAGTGGCAACAATGGCAAAGAA 548
Query 295 GTAGGAGATGAGAAGTTAGCT-GGCGTTATTGATCTGGCAAACATTACATACAAGAACCT 353
|| |||| |||||| |||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 549 GTTGGAGGTGAGAAATTAG-TAGCCGTTATTGATCTGGCAAACATTACATACAAGAACCT 607
Query 354 TGATGCTCGTGGATTGATCACCGGCTTTCAATTCTTACAATCTTACTACCCGGAACGCCT 413
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 608 TGATGCTCGTGGATTGATCACTGGCTTTCAATTCTTACAATCTTACTACCCGGAACGCCT 667
Query 414 TGCAAAATGCTACATCTTGCATATGCCCGGATTCTTCGTGGCCGTCTGGAAATTCGTCTG 473
||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 668 TGCAAAATGCTACATTTTGCATATGCCCGGATTCTTCGTGACCGTTTGGAAATTCGTCTG 727
Query 474 CCGCTTTCTAGAGAAAGCAACTCAGGAAAAGATTGTGATAGTAACGGATGAAGAAGAACA 533
||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 728 CCGTTTTCTAGAGAAAGCAACTCAGGAAAAGATTGTGATAGTTACGGATGGAGAAGAACA 787
Query 534 GAGAAAATTCGAGGAGGATATCGGAGCAGATGCTTTACCGGAAGAGTACGGTGGCCGAGC 593
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 788 GAGAAAATTCGAGGAGGAGATCGGAGCAGATGCTTTACCGGAAGAGTACGGTGGCCGAGC 847
Query 594 TAAGCTCAGTAGCTCACAGCAATCCAAGATGTTCTTCTTCCTCAGACTGCTCCAGTAA 651
|||||||| | | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 848 TAAGCTCA----C--A--GCAATCCAAGATGTTCTTCTTCCTCAGGCTGCTCCAGTAA 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5