BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911785
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19620.1 | Symbols: | unknown protein; Has 44 Blast hits to... 710 0.0
> AT1G19620.1 | Symbols: | unknown protein; Has 44 Blast hits
to 24 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa
- 22; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes
- 8 (source: NCBI BLink). | chr1:6784020-6785075 FORWARD
LENGTH=954
Length=954
Score = 710 bits (384), Expect = 0.0
Identities = 642/759 (85%), Gaps = 48/759 (6%)
Strand=Plus/Plus
Query 1 ATGGAGGCAGAGAAAGCAGAGGCGAGTAGGAGATACAACAATCCGTTCCAGAATAT-TCG 59
||||||||||||||||||||||||||| ||| |||| | |||| |||||||||| | |
Sbjct 1 ATGGAGGCAGAGAAAGCAGAGGCGAGTTGGACATACGAGAATCTGTTCCAGAAT-TGTAA 59
Query 60 ATCCTA-CGTCGAATTGGCCGGCGTCGTAG-CTCTCGGTTACTGTTGTTTACCGGCGATC 117
|| | | ||| | |||| ||| |||||||| || ||||||||||||||||||||| ||||
Sbjct 60 ATAC-ACCGTTGGATTGTCCGCCGTCGTAGCCT-TCGGTTACTGTTGTTTACCGGTGATC 117
Query 118 GT-GA--ATCT--AC-TTAAAA-CCAAAACCACGGaaaaaaaGGAACCAGAGATTTACGA 170
|| | | || || |||| || ||||||||||||||||||||||||| |||||||
Sbjct 118 GTCAACCAACTGCACGGCAAAATCC-AAACCACGGAAAAAAAGGAACCAGATCTTTACGA 176
Query 171 TCAATATGTAGCCGCCTTGccc-ccaccccccACCGTCACGCCGTTCGATTACTATGATA 229
|||||||||||||||| | ||| |||||| ||||||||||||||||||||| |||| |||
Sbjct 177 TCAATATGTAGCCGCCGT-CCCTCCACCCTCCACCGTCACGCCGTTCGATTCCTATAATA 235
Query 230 TATTGAAGGTTGGAGATTTTGGATATGAAAATAACTCGAGTTACAGAGAGATTGTACCGG 289
| | ||| ||| |||| |||||||| | |||||||||| ||||||||||| |||||| |
Sbjct 236 TGTCAAAGTTTGAAGATGTTGGATATTACAATAACTCGACTTACAGAGAGAATGTACCCG 295
Query 290 AGTTTCAAGCGGTTAAGGCGGTTGAGGAGAGTAGTTGTACTTATGATCAAGAAGTGGTGG 349
||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct 296 CGTTTCAAGCGGTTAAGGCGGTTGAGGAGAGTAGTTATAGTTACGATCAAGAAGTGGTGG 355
Query 350 AGATGAGTTCGAAGAGTTATAGGAGGAC--G-AGATCGGAGAAGAAGAAGACGGAGAGGA 406
||||||||||||||||||| |||||||| | |||||||||||||||| |||||||||||
Sbjct 356 AGATGAGTTCGAAGAGTTACAGGAGGACGAGCAGATCGGAGAAGAAGATGACGGAGAGGA 415
Query 407 TGGTGGAGTTTCGGAGGACGGAATCGGAGAGGGTGACGAAAACGGGGTCGTGGAGGTCGC 466
||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 416 TGGTGGAGTATCGGAAGACGGAAACGGAGAGAGTGACGAAAACGGGGTCGTGGAGGTCGC 475
Query 467 AGTCTATGGATGGTTTAAGCAGCG---AGGAGTTTCGTATGACGGTGGAGACTTTTATCT 523
|||||||||||||||||||||||| |||||||||||| |||| | |||||||| |||
Sbjct 476 AGTCTATGGATGGTTTAAGCAGCGGCGAGGAGTTTCGTAGGACGATACAGACTTTTGTCT 535
Query 524 CGGAGAAGAAGAAGATGC-T-TA-TCCGAGATAGCGGCGTCGTTGATCAGT-GGCAAAAC 579
||||| |||||||||||| | || |||||| ||||||||||| |||||||| || |||||
Sbjct 536 CGGAGCAGAAGAAGATGCATATAATCCGAGCTAGCGGCGTCGATGATCAGTTGG-AAAAC 594
Query 580 GGCTACGTTCACTTT--T--CGGAA-C-ACGACTACGT-T-C-CTCAGTGGCAAAACGGC 630
|||||| ||||| | ||| | | || | ||| | | || | ||| || |||||
Sbjct 595 GGCTACATTCACCGAGCTAGCGGCGTCGATGA-T-CGTGTTCACT-ATTGGGAACACGGC 651
Query 631 GGCGTTCCTCAATGGCAAAACGGCTG-CGTTCCTCAGTGGCAAAACGGCGGCGTTCCTCA 689
| ||||||||| |||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 652 GCCGTTCCTCAGTGGCAAAACGA-TGACGTTCCTCAGTTGCAAAACGGCGGCGTTCCTCA 710
Query 690 GT--TG-CAAAACGGC-GCCGTTAAC-CAGTGGCAAAAC 723
| || ||||||||| || ||| | |||| |||||||
Sbjct 711 TTGGTGGCAAAACGGCAGC-GTTT-CTCAGTTGCAAAAC 747
Score = 250 bits (135), Expect = 2e-65
Identities = 226/269 (84%), Gaps = 9/269 (3%)
Strand=Plus/Plus
Query 567 TCAGTGGCAAAACGGCTACGTT-CAC-TT-TTCGG-AACACGACTA-CGTTCCTCAGTGG 621
||||| |||||||||| |||| | | || | || || ||| | | |||| |||||| |
Sbjct 684 TCAGTTGCAAAACGGCGGCGTTCCTCATTGGT-GGCAAAACGGC-AGCGTTTCTCAGTTG 741
Query 622 CAAAACGGCGGCGTTCCTCAATGGCAAAACGGCTGCGTTCCTCAGTGGCAAAACGGCGGC 681
|||||| ||| ||||| ||||||||||||||| |||||| ||||| ||||||||| |
Sbjct 742 CAAAACAGCGATGTTCCACAATGGCAAAACGGCGGCGTTCTTCAGTTGCAAAACGGTGAT 801
Query 682 GTTCCTCAGTTGCAAAACGGCGCCGTTAAC-CAGTGGCAAAACGATGTCCCTGAGCCTCA 740
||||| || | ||||| ||||| |||| | |||| |||||| | ||||| |||||||||
Sbjct 802 GTTCCACAATGGCAAACCGGCGGCGTT-TCTCAGTTGCAAAATGGTGTCCATGAGCCTCA 860
Query 741 AAGCGGTGTCGTTCAGTGGCAAGGATCTCGTGACGATGGAAGTGGTCGTCATCGTCATCG 800
|| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 861 AAACGGTATCGTTCAGTGGAAAGGATCTCGTGACGATGGAAGTGGTCGTCATCGTCATCG 920
Query 801 TCATGGTCATCGTAGTCGTAGACATAGGC 829
||||||||||||||||||| ||||||||
Sbjct 921 CCATGGTCATCGTAGTCGTAAACATAGGC 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5