BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg911785 Length=885 Score E Sequences producing significant alignments: (Bits) Value AT1G19620.1 | Symbols: | unknown protein; Has 44 Blast hits to... 710 0.0 > AT1G19620.1 | Symbols: | unknown protein; Has 44 Blast hits to 24 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa - 22; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:6784020-6785075 FORWARD LENGTH=954 Length=954 Score = 710 bits (384), Expect = 0.0 Identities = 642/759 (85%), Gaps = 48/759 (6%) Strand=Plus/Plus Query 1 ATGGAGGCAGAGAAAGCAGAGGCGAGTAGGAGATACAACAATCCGTTCCAGAATAT-TCG 59 ||||||||||||||||||||||||||| ||| |||| | |||| |||||||||| | | Sbjct 1 ATGGAGGCAGAGAAAGCAGAGGCGAGTTGGACATACGAGAATCTGTTCCAGAAT-TGTAA 59 Query 60 ATCCTA-CGTCGAATTGGCCGGCGTCGTAG-CTCTCGGTTACTGTTGTTTACCGGCGATC 117 || | | ||| | |||| ||| |||||||| || ||||||||||||||||||||| |||| Sbjct 60 ATAC-ACCGTTGGATTGTCCGCCGTCGTAGCCT-TCGGTTACTGTTGTTTACCGGTGATC 117 Query 118 GT-GA--ATCT--AC-TTAAAA-CCAAAACCACGGaaaaaaaGGAACCAGAGATTTACGA 170 || | | || || |||| || ||||||||||||||||||||||||| ||||||| Sbjct 118 GTCAACCAACTGCACGGCAAAATCC-AAACCACGGAAAAAAAGGAACCAGATCTTTACGA 176 Query 171 TCAATATGTAGCCGCCTTGccc-ccaccccccACCGTCACGCCGTTCGATTACTATGATA 229 |||||||||||||||| | ||| |||||| ||||||||||||||||||||| |||| ||| Sbjct 177 TCAATATGTAGCCGCCGT-CCCTCCACCCTCCACCGTCACGCCGTTCGATTCCTATAATA 235 Query 230 TATTGAAGGTTGGAGATTTTGGATATGAAAATAACTCGAGTTACAGAGAGATTGTACCGG 289 | | ||| ||| |||| |||||||| | |||||||||| ||||||||||| |||||| | Sbjct 236 TGTCAAAGTTTGAAGATGTTGGATATTACAATAACTCGACTTACAGAGAGAATGTACCCG 295 Query 290 AGTTTCAAGCGGTTAAGGCGGTTGAGGAGAGTAGTTGTACTTATGATCAAGAAGTGGTGG 349 ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| Sbjct 296 CGTTTCAAGCGGTTAAGGCGGTTGAGGAGAGTAGTTATAGTTACGATCAAGAAGTGGTGG 355 Query 350 AGATGAGTTCGAAGAGTTATAGGAGGAC--G-AGATCGGAGAAGAAGAAGACGGAGAGGA 406 ||||||||||||||||||| |||||||| | |||||||||||||||| ||||||||||| Sbjct 356 AGATGAGTTCGAAGAGTTACAGGAGGACGAGCAGATCGGAGAAGAAGATGACGGAGAGGA 415 Query 407 TGGTGGAGTTTCGGAGGACGGAATCGGAGAGGGTGACGAAAACGGGGTCGTGGAGGTCGC 466 ||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 416 TGGTGGAGTATCGGAAGACGGAAACGGAGAGAGTGACGAAAACGGGGTCGTGGAGGTCGC 475 Query 467 AGTCTATGGATGGTTTAAGCAGCG---AGGAGTTTCGTATGACGGTGGAGACTTTTATCT 523 |||||||||||||||||||||||| |||||||||||| |||| | |||||||| ||| Sbjct 476 AGTCTATGGATGGTTTAAGCAGCGGCGAGGAGTTTCGTAGGACGATACAGACTTTTGTCT 535 Query 524 CGGAGAAGAAGAAGATGC-T-TA-TCCGAGATAGCGGCGTCGTTGATCAGT-GGCAAAAC 579 ||||| |||||||||||| | || |||||| ||||||||||| |||||||| || ||||| Sbjct 536 CGGAGCAGAAGAAGATGCATATAATCCGAGCTAGCGGCGTCGATGATCAGTTGG-AAAAC 594 Query 580 GGCTACGTTCACTTT--T--CGGAA-C-ACGACTACGT-T-C-CTCAGTGGCAAAACGGC 630 |||||| ||||| | ||| | | || | ||| | | || | ||| || ||||| Sbjct 595 GGCTACATTCACCGAGCTAGCGGCGTCGATGA-T-CGTGTTCACT-ATTGGGAACACGGC 651 Query 631 GGCGTTCCTCAATGGCAAAACGGCTG-CGTTCCTCAGTGGCAAAACGGCGGCGTTCCTCA 689 | ||||||||| |||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 652 GCCGTTCCTCAGTGGCAAAACGA-TGACGTTCCTCAGTTGCAAAACGGCGGCGTTCCTCA 710 Query 690 GT--TG-CAAAACGGC-GCCGTTAAC-CAGTGGCAAAAC 723 | || ||||||||| || ||| | |||| ||||||| Sbjct 711 TTGGTGGCAAAACGGCAGC-GTTT-CTCAGTTGCAAAAC 747 Score = 250 bits (135), Expect = 2e-65 Identities = 226/269 (84%), Gaps = 9/269 (3%) Strand=Plus/Plus Query 567 TCAGTGGCAAAACGGCTACGTT-CAC-TT-TTCGG-AACACGACTA-CGTTCCTCAGTGG 621 ||||| |||||||||| |||| | | || | || || ||| | | |||| |||||| | Sbjct 684 TCAGTTGCAAAACGGCGGCGTTCCTCATTGGT-GGCAAAACGGC-AGCGTTTCTCAGTTG 741 Query 622 CAAAACGGCGGCGTTCCTCAATGGCAAAACGGCTGCGTTCCTCAGTGGCAAAACGGCGGC 681 |||||| ||| ||||| ||||||||||||||| |||||| ||||| ||||||||| | Sbjct 742 CAAAACAGCGATGTTCCACAATGGCAAAACGGCGGCGTTCTTCAGTTGCAAAACGGTGAT 801 Query 682 GTTCCTCAGTTGCAAAACGGCGCCGTTAAC-CAGTGGCAAAACGATGTCCCTGAGCCTCA 740 ||||| || | ||||| ||||| |||| | |||| |||||| | ||||| ||||||||| Sbjct 802 GTTCCACAATGGCAAACCGGCGGCGTT-TCTCAGTTGCAAAATGGTGTCCATGAGCCTCA 860 Query 741 AAGCGGTGTCGTTCAGTGGCAAGGATCTCGTGACGATGGAAGTGGTCGTCATCGTCATCG 800 || |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 861 AAACGGTATCGTTCAGTGGAAAGGATCTCGTGACGATGGAAGTGGTCGTCATCGTCATCG 920 Query 801 TCATGGTCATCGTAGTCGTAGACATAGGC 829 ||||||||||||||||||| |||||||| Sbjct 921 CCATGGTCATCGTAGTCGTAAACATAGGC 949 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43201366420 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5