BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911792
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19690.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1581 0.0
> AT1G19690.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:6807715-6809569 REVERSE LENGTH=1276
Length=1276
Score = 1581 bits (856), Expect = 0.0
Identities = 997/1065 (94%), Gaps = 9/1065 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGTTTTTCAGTTACCAAATTTGTCGCCGGAGATT-CTTCTCCGTTTTTCTCCTAC 59
|||||||||||||||||||||| |||||| ||||||||| ||| |||||||| |||| ||
Sbjct 8 ATGGCGGTTTTTCAGTTACCAAGTTTGTCACCGGAGATTCCTT-TCCGTTTTACTCCCAC 66
Query 60 ACCACTT-GATTTTATAAATCGTAGGAGAATCAACTTTTTCCGGCCATTGTCAGCGATCG 118
||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 67 ACCACTTAAATTTT-CAAATCGTAGGAGAATCAACTTTTTCCGGCCATTATCAGCAACCG 125
Query 119 GCGATTCTCAATCCGTTGCACCAGATTCAGAATC-ACGAAACCGGATGTTCATTCTCGGA 177
|||||||| ||||| |||||||||| ||||||| || |||| ||||||||||||||
Sbjct 126 ACGATTCTCGATCCGGTGCACCAGATCCAGAATCGCCG-AACCAAATGTTCATTCTCGGG 184
Query 178 ATGGGATTCGTCGGAGGATTTTTTGCGCAACAGCTCAAAGAAGCAGACTGGGTGGTTTCA 237
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 185 ATGGGATTCGTCGGAGGTTTTTTTGCGCAACAGCTCAAAGAATCAGACTGGGTGGTTTCA 244
Query 238 GGGACTTGCAGGAGTGATTCGAAGAAGAAAGAATGGGAAAAGAGAGGAATCAATCTTCAT 297
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 245 GGGACTTGCAGGAGTGATTCTAAGAAGAAAGAATGGGAAAAGAGAGGAATTAATCTTCAT 304
Query 298 CCATTTTCTGCAGATTCACCTGAATGGAGCTTGCTGCTAGATTCAGTGAAAGATTACACT 357
|||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 305 CCATTTTCTGCAGACTCACCTGAATGGAGC-T--TGCTAGATTCAGTGAAAGATTACACT 361
Query 358 CACCTGCTTATTTCCATTCCACCTTTAGCAGACATTGGTGATCCGATGTTGCGGAATGTG 417
|| || || ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 362 CATCTACTCATTTCCATTCCTCCTTTAGCTGACATTGGTGATCCGATGTTGCGGAATGTA 421
Query 418 GAACTTGTTAGAGACAAACTTTCTAGTGGAAATCTTCGATGGCTTTGTTATCTTTCATCA 477
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 422 GAACTTGTGAGAGACAAGCTTTCGAGTGGAAATCTTCGATGGCTTTGTTATCTCTCATCA 481
Query 478 ACAAGTGTGTATGGAGATTGTCGTGGTGCGTGGGTCAATGAAAATCATCCCCCAAATCCT 537
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 482 ACAAGTGTGTATGGAGATTGTGGTGGTGCGTGGGTCAATGAAAATCATCTCCCAAATCCT 541
Query 538 AAAACTCAGTCAGCCAAAGTGAGATTAGCCGCAGAGGAAGGATGGTTAAGCTTGGGTCGT 597
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 542 AAAACTCAGTCAGCCAAAGTGAGATTAGCTGCAGAACAAGGATGGTTAAGCTTGGGTCGT 601
Query 598 GATCTTGGGGTTTCGACTCAAATACTTCGACTTGGAGGTATCTATGGACCTGGTCGAAGT 657
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 602 GATCTTGGGGTTTCGACTCAAATACTTCGACTTGGGGGTATTTATGGACCTGGTCGAAGT 661
Query 658 GCTATTGATACCTTGTTAAAGCAGGAGCGTTTGTCTGAAGGTCAAAAGAGAAGAGCGTCC 717
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GCAATTGATACCTTGTTAAAGCAGGAGCGTTTGTCTGAAGGTCAAAAGAGAAGAGCGTCC 721
Query 718 CGTAAATTCACGTCCAGAGTTCATGTTGAAGATATATGCCAAGTTCTCAAAGCTGCCACT 777
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 722 CGTAAATTCACGTCGAGAGTTCATGTTGAAGATATATGCCAAGTTCTTAAAGCTGCCACT 781
Query 778 GAAAAGCCATCATCAGGGGAAATCTACAATGTTGTTGATGATGATCCGGCACCAAGAGAA 837
||||||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct 782 GAAAAGCCAGCATCAGGGGAGATCTACAATATTGTTGATGATGATCCGGCAGCAAGAGAA 841
Query 838 GAGGTGTTTGAATATGCCTTGGAGTTGATCGAGAAACGTTGGCCAGGGATTATCAACACA 897
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 842 GAGGTGTTTGAATATGCCTTGGAGTTGATCGAGAAACGTTGGCCGGGGAATATCACCACA 901
Query 898 AAACCATTTCCATTTCTGTATGAATCTCGGGAGGAGAGTTCATTGAGAGGCGAAAAACGA 957
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 902 AAACCATTTCCATTTCTGTATGAATCTCGGGAGGAAAGTTCATTGAGAGGCGAGAAACGA 961
Query 958 GTCCGCAACGAACACATGAAGAATAAACTAGGAGTGAAATTGATATATCCTTCATACAAG 1017
||| ||||||||| ||||||| |||||||||||||||||||| |||||||||| || |||
Sbjct 962 GTCTGCAACGAACGCATGAAGGATAAACTAGGAGTGAAATTGTTATATCCTTCGTATAAG 1021
Query 1018 TCAGGATTGCAAAGCATAGTCGAGAACATGGACAACCCTTTTTGA 1062
|||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1022 TCAGGACTGCAAAGCATAGTCGAGAACATGGACAACCGTTTTTGA 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5