BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911862

Length=861
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20730.1 | Symbols:  | Protein of unknown function (DUF833) ...   106    4e-22


> AT1G20730.1 | Symbols:  | Protein of unknown function (DUF833) 
| chr1:7194256-7195575 FORWARD LENGTH=946
Length=946

 Score =  106 bits (57),  Expect = 4e-22
 Identities = 77/86 (90%), Gaps = 3/86 (3%)
 Strand=Plus/Plus

Query  1   ATGGGGATCGTAGCATTCCAATGGGGAGAGGGAGAAAACCA-ACTGACGCTGCTGCAAAA  59
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct  1   ATGGGGATCGTAGCATTCCAATGGGGAGAGGGAGAAAAC-ATACTGACGCTGCTGCAGAA  59

Query  60  CAGAGACAATTGGGATTCATGG-CAA  84
           |||||| || ||| | ||| || |||
Sbjct  60  CAGAGAGAACTGGCAATCAAGGTCAA  85



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41995746892


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5