BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911864
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20750.1 | Symbols: | RAD3-like DNA-binding helicase protei... 606 2e-172
AT1G20720.1 | Symbols: | RAD3-like DNA-binding helicase protei... 339 7e-92
> AT1G20750.1 | Symbols: | RAD3-like DNA-binding helicase protein
| chr1:7203302-7208998 REVERSE LENGTH=3435
Length=3435
Score = 606 bits (328), Expect = 2e-172
Identities = 424/468 (91%), Gaps = 15/468 (3%)
Strand=Plus/Plus
Query 14 CTTATCAACCCTACGGAACCCATCTTGCGTTCATGAGCCGAGTCATATCTACGCTTTATC 73
|||| |||||||||||||| || ||||||||||||||||| ||||||||||||||| |||
Sbjct 110 CTTACCAACCCTACGGAACACAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTTGATC 169
Query 74 GTGCCCAAAGATATGGTCACTCCCACACGTTGCTCGAGTCTCCCACGAATACAGGCAAAT 133
||||||| ||| |||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 170 GTGCCCAGAGAGATGGTCACTCCCACGCATTGCTCGAGTCTCCCACGGGTACAGGCAAAT 229
Query 134 CTCTGTCTTTGCTCTGCTCCGTTCTCCCTTGGCAAAAGAGCTATAAATCGCGGTTTCCAA 193
|||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |
Sbjct 230 CTCTGTCTTTGCTCTGCTCCGTTCTCGCTTGGCAAAAGAGCTACAAATCTCGGTTTCCTA 289
Query 194 ATGGAAATTTGTCTCATTCGAAAACGCAGCCCTC--A-ACTGCTGCCTCTAGCAATGTGG 250
|||||||||||||||||||||||||||||||||| | | ||||| ||||| |||||||
Sbjct 290 ATGGAAATTTGTCTCATTCGAAAACGCAGCCCTCAGATATTGCTGGATCTAGTAATGTGG 349
Query 251 AGCCTCCTGAA-C-CAGCAATCCCTACCATATACTATGC-T--CGAACTCACGCTCAGAT 305
|||| | |||| | ||| | |||| |||||||||||||| | |||||||| ||||||||
Sbjct 350 AGCCACATGAACCTCAG-ATTCCC-ACCATATACTATGCTTCACGAACTCATGCTCAGAT 407
Query 306 CACTCAAGTCATTCTTGAGTATCGGAAAACCGGTTACAGAGTTCCTATGACTGTATTGGT 365
|||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 408 CACTCAAGTCATTCGTGAGTATCGAAAAACCGGTTACAGAGTTCCCATGACTGTATTGGG 467
Query 366 TTCAAGGAAACGTTACTGCACCAATAGTCATGTACAGGGGAAAGAGAATGCT-GACGAAA 424
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 468 TTCAAGGAAACGTTACTGCACCAATAGTCATGTACAGGGGAAAGAGAATG-TAGACGAAA 526
Query 425 AAC-T-G-TTGCTCCTAAAAGATAAGAAAAACATAAAATGTGCTGAGT 469
|| | | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 527 AATGTCGGTTGCTCCTAAAAGATAAGAAAAACATAAAATGTGCCGAGT 574
Score = 375 bits (203), Expect = 5e-103
Identities = 380/455 (84%), Gaps = 54/455 (12%)
Strand=Plus/Plus
Query 637 GGAAAGAACAGATTAG-TTGGAAGAAATAGCAGAGTTAAGAAAGCATGGTCTTTTCTAAC 695
|||||||||||||| | |||||||||||||||| |||||||||||| ||||| || ||||
Sbjct 1678 GGAAAGAACAGATT-GATTGGAAGAAATAGCAGCGTTAAGAAAGCAGGGTCTGTTATAAC 1736
Query 696 TGAGGCTCAAGATGATTCCAAGAAAGGATCTGCATTTCTTGCAGTGTGTAGGGGAAAGGT 755
||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||
Sbjct 1737 TGAGGCTCAAGATGATTCCAAGAGAGGATCTGCATTTCTTGCAGTATGTAGAGGAAAGGT 1796
Query 756 TTCAGAA--G--GG----CT-TGATGATTGCG-CA---CA--GATGATTGTTGGCATTCC 800
||||||| | || | |||||| || || || ||| ||||||||||||||
Sbjct 1797 TTCAGAAGGGATGGATTTTTCTGATGACAACGCCAGGGCAGTGATAATTGTTGGCATTCC 1856
Query 801 ATTTCCAAACTTTTCTAACGAATCACTTTCTTGCCAGGTAGTCGAACTAAAGAGAAAATA 860
| |||||||| || || || | || | ||||||| ||||||||||||||
Sbjct 1857 ACTTCCAAAC--TT-GGGCG-AT-A-----TT--C---TAGTCGAGCTAAAGAGAAAATA 1901
Query 861 TAAGGATACCAACAAATCATCTAAAAA-C--CTTGGAGGGAGTGAGTGGTATTGCCAACA 917
||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1902 TAATGATACCAACAAATCATCTAAAAACCTTCTTGGAGGGAGTGAGTGGTATTGCCAACA 1961
Query 918 GGCGTATCATGCTTTAAATCAAGCAGCAGGACGATGTATCCGGCATAGGTTTGATTATGG 977
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1962 GGCGTATCGTGCTTTAAATCAAGCAGCAGGACGATGTATCCGTCATAGGTTTGATTATGG 2021
Query 978 TGCCATCATATTCTTA---AT---A-C-C-GA-----C--A-A-CCAAGGAACAGAGCGT 1019
|||||||||||||||| || | | | || | | | ||||||||||||||||
Sbjct 2022 TGCCATCATATTCTTAGTTATTGTAGCTCTGAGGTTACCGACAACCAAGGAACAGAGCGT 2081
Query 1020 CTATTTCAAAGTGACTAAGGCAATCTATCAAAGTG 1054
||||||||||||| |||||||| ||||||||||||
Sbjct 2082 CTATTTCAAAGTGGCTAAGGCA-TCTATCAAAGTG 2115
Score = 158 bits (85), Expect = 2e-37
Identities = 104/113 (92%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 1287 TCTAGAAGCAGAGTCACCTTTGAACATGAGTGTTAATTCCCATGCTTTGAAGAGAAGAAA 1346
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 2664 TCTAGAAGCAGAGTCACCTTTGAACATGAGTGTTAATTCACATGTTTTGAAGAGAAGAAA 2723
Query 1347 GTTC-CATACCTCTCCAGTCATCATTGACCTTGAAGAAGAAAGCAGCAATGCT 1398
||| | ||| |||||| |||||||||||||||||||||||| ||| ||||||
Sbjct 2724 GTTTAC-TACATCTCCAATCATCATTGACCTTGAAGAAGAAAACAGTAATGCT 2775
Score = 154 bits (83), Expect = 3e-36
Identities = 90/93 (97%), Gaps = 2/93 (2%)
Strand=Plus/Plus
Query 1446 TGTCCCAAACACCTGCCTTGGAGTGCAAGTCATGGCTACTG-TGTCATCAAACGTCCAGT 1504
|||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||
Sbjct 3141 TGTCCCAAACACCTGCCTTGGAATGCAAGTCATGGCTACTGAT-TCATCAAACGTCCAGT 3199
Query 1505 TTATGAGCAAAATTTTGTTCTTTGCTGATCATC 1537
|||||||||||||||||||||||||||||||||
Sbjct 3200 TTATGAGCAAAATTTTGTTCTTTGCTGATCATC 3232
> AT1G20720.1 | Symbols: | RAD3-like DNA-binding helicase protein
| chr1:7185658-7192794 REVERSE LENGTH=3528
Length=3528
Score = 339 bits (183), Expect = 7e-92
Identities = 362/441 (82%), Gaps = 41/441 (9%)
Strand=Plus/Plus
Query 640 AAGAACAGATTAGTTGGAAGAAATAGCAGAGTTAAGAAAGCATGGTCTTTTCTAACTGAG 699
||||| | | || ||||||||||||| |||| |||||||||| || || || |||||||
Sbjct 1873 AAGAATAAAATAATTGGAAGAAATAGAAGAGCTAAGAAAGCAGGGCCTATTAAAACTGAG 1932
Query 700 GCTCAAGATGATTCCAAGAAAGGATCTGCATTTCTTGCAGTGTGTAGGGGAAAGGTTTCA 759
||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||
Sbjct 1933 ACTCAAGATGATTCCAAGAAGGGAGCTGCATTTCTTGCAGTGTGTAGAGGAAAGGTTTCA 1992
Query 760 GAAGGGCTTGA---TGAT--TG----CG-CA---CA--GATGATTGTTGGCATTCCATTT 804
|||||| |||| || | || || || || ||| ||||||||||||||||||
Sbjct 1993 GAAGGGATTGACTTTGCTGATGACAACGCCAGGGCAGTGATAATTGTTGGCATTCCATTT 2052
Query 805 CCAAACTTTTCTAACGAATCACTTTCTTGCCAGGTAGTCGAACTAAAGAGAAAATATAAG 864
|||||| | | || || | | || || ||||| ||| |||| |||||||||
Sbjct 2053 CCAAAC---T-T-AC--ATGA---TATT--CA---AGTCGGACTGAAGAAAAAATATAAT 2097
Query 865 GATACCAACAAATCATCTAAAA-AC--CTTGGAGGGAGTGAGTGGTATTGCCAACAGGCG 921
|||||| |||| |||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 2098 GATACCTACAAGTCATCTAAAAGTCTTCTTGGAGGGAGTGAATGGTATTGCCAACAGGCC 2157
Query 922 TATCATGCTTTAAATCAAGCAGCAGGACGATGTATCCGGCATAGGTTTGATTATGGTGCC 981
|||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2158 TATCGTGCGCTAAATCAAGCTGCAGGACGATGTATCCGGCATAGGTTTGATTATGGTGCC 2217
Query 982 ATCATATTCTTA-AT-ACCGA--CAAC---CAA-GGAACAGAGCGTCTATTTCAAAGTGA 1033
|||||||||||| || | ||| ||| ||| |||||||||||||||||||||| ||
Sbjct 2218 ATCATATTCTTAGATGAGCGATACAAAGAACAAAGGAACAGAGCGTCTATTTCAAAATGG 2277
Query 1034 CTAAGGCAATCTATCAAAGTG 1054
|||||||| ||||||||||||
Sbjct 2278 CTAAGGCAGTCTATCAAAGTG 2298
Score = 128 bits (69), Expect = 2e-28
Identities = 84/91 (92%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 1448 TCCCAAACACCTGCCTTGGAGTGCAAGTCATGGCTACTG-TGTCATCAAACGTCCAGTTT 1506
|||||||||| || || |||||||||||||||||||||| | |||||||| |||||||||
Sbjct 3221 TCCCAAACACATGTCTCGGAGTGCAAGTCATGGCTACTGAT-TCATCAAATGTCCAGTTT 3279
Query 1507 ATGAGCAAAATTTTGTTCTTTGCTGATCATC 1537
||||||||||||||||||||||||||||||
Sbjct 3280 TTGAGCAAAATTTTGTTCTTTGCTGATCATC 3310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5