BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911865
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20735.1 | Symbols: | F-box and associated interaction doma... 1421 0.0
AT1G20360.1 | Symbols: | F-box family protein | chr1:7046504-7... 451 6e-126
> AT1G20735.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:7197491-7198681 FORWARD LENGTH=1191
Length=1191
Score = 1421 bits (769), Expect = 0.0
Identities = 1069/1208 (88%), Gaps = 43/1208 (4%)
Strand=Plus/Plus
Query 1 ATGAATGACCTACCCTTTCATCTTCTCGACCAGATTCTCTTCAGATTGGACCCCAAATCT 60
||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1 ATGAATGACTTACCCTTTCATCTTCTTGACAACATTCTCTTCAGATTGGACCCCAAATCT 60
Query 61 CTGGGGATAATGCGATGCACTAATAGATCTATCAATTCGCATATATCCGACGATCCGAAT 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CTGGGGATAATGCGATGCACTAATAGATCTATCAATTCGCATATATCCAACGATCCGAAT 120
Query 121 TTTGTAACTGGATACTCTTCCGAATATTCTTCTCGGGTTGGCTCCAGT-TTTATTCACCT 179
||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 121 TTTGTAAGTGGATACTCTTCCGAATATTCTTCTCGGGTTGGCTCCAGTCTTT-TTCACGT 179
Query 180 TGGG-T--GCTAT-GGCGAC-TTTTACATCTTCTGCCACCATTTGGCCTCTTCATGCGAT 234
|||| | ||| | |||||| ||| |||| ||||||||||||| | | ||||||||||
Sbjct 180 TGGGATCAGCT-TGGGCGACAATTT-CATCATCTGCCACCATTTTTCTTATTCATGCGAT 237
Query 235 TCTA-TGTCAGTGGACA-AAAGAGCAATGTT-GACATATCACT-TGTGTTACTTTTTCGG 290
|||| | ||||| || | ||||| || |||| || || || | | |||||| |||| ||
Sbjct 238 TCTACT-TCAGT-GAAAGAAAGATCAGTGTTGGA-ATTTCTGTCT-TGTTACATTTTAGG 293
Query 291 CTCATGCTCCGGCCTTCTCTTACTATACATGGATGGCCTCTTCGTCGCAAATCCCCTCAC 350
|||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||
Sbjct 294 CTCATGCTCCGGCCTTCTCTTACTATTCATCGATGGCCTCTTCCTCGCAAATCCCCTCAC 353
Query 351 AAAGAGGTTTCGACGTTTGAATCACTCTGGCTCAAAGCTTCTGTCTCACGTATTTGGTGC 410
|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 354 AAAGAGGTTTCGACCTTTGAATCACTCTGGCTCAAAGCTTCTGTCTCCCATATTTGGT-C 412
Query 411 -TACT-GT----T--CCT--TTTTATGACGCTTTACAAGAGAACAAAGCTCGTATA-GAG 459
|| | || | ||| | |||||| | || |||| |||||||||||| | |||
Sbjct 413 GTAATAGTCAAATCACCTCACGTGATGACGGTATAGAAGATTACAAAGCTCGTA-AGGAG 471
Query 460 AGAAAGAT-CTGTGTTGGTTTCGTGGTAAGTCCCACCAAAGGTTTCAAGATCGTATGCAT 518
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 AGAAGGATGC-GTGTTGGTTTCGTGGTAAGTCCCACCAAAGGTTTCAAGATCGTATGCAT 530
Query 519 ACTCGAGATGGAAACGGTGTACGGATTCGAGATCAGTGACGGAGATTCATGGAGGTTATC 578
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 531 ACTCGAGATGGAAACGGTGTACGGGTTCGAGATCAGTGACGGAGATTCATGGAGGTTATC 590
Query 579 GGAGACAACCATCACCACTAGCTCAAAAAGCGAACTCGCGACATGGATAAAACCTGTTTA 638
||| ||||||||||||||||||||||||||| |||| |||||||||| |||||||||||
Sbjct 591 GGAAACAACCATCACCACTAGCTCAAAAAGCCTACTCACGACATGGATGAAACCTGTTTA 650
Query 639 CTTGGACGGCACTCTTCACTGGTTGAGAAACGACGGGAGTATCATAGCTTTCAATCCTGA 698
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 651 CTTGGACGGCACTCTTCACTGGCTGAGAAACGACGGGAGTATCATAGCTTTCGATCCTGA 710
Query 699 GACAGAGCAAGCAAGCTTCGTTCCTTCCATATTCCATCGTGGAGAACCGGATACGAAGCT 758
||||||||| ||| |||||||||||||| ||||||||||||||| ||||| |||||||||
Sbjct 711 GACAGAGCAGGCACGCTTCGTTCCTTCCGTATTCCATCGTGGAGGACCGGGTACGAAGCT 770
Query 759 TCTTTTCGCGGAAGATAGTAAGAAGAATTGCCTGATCTTAGTATCGGGGACGAAGGAAAC 818
||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 771 GATTTTCACGGAAGATAGTAAGAAGAATCGCCTGACCTTAATATCGGGGACGAAGGAAAC 830
Query 819 AATCTCAGTTTACACACTAGTCAAGAATTCCAAATGGGACCTCACCAGGCAGATCGCGAA 878
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 831 AATTTCAGTTTACACACTAGTCAACAATTCCAAATGGGACCTCACCAGGCAGATCGCAAA 890
Query 879 CGTATATATGAACGAAGGAGAGCTTTTACACTGGCATTTGGTTATGTGCGACGGCAAGTG 938
||||||| |||||||| ||| ||| || |||||| ||| || ||||||||||||||||
Sbjct 891 CGTATATGTGAACGAAATAGATCTTCTATGCTGGCAGTTGATTGTGTGCGACGGCAAGTG 950
Query 939 TCTTGTGGTGAGGGAGATGAAGAAT-ATTACTTGTTATGGTGTGGTTCATGTGTACGACT 997
|||||| || | | || ||| | | || | | | || || |||||||||||||||||||
Sbjct 951 TCTTGTAGTT-GTG-GA-GAACACTCAT-AGTGGCTACGGCGTGGTTCATGTGTACGACT 1006
Query 998 TGGAAGCTAACACTTGGGGAGTTTCAGGGTCGACCCAAGCTTATGG-CA-GTAGGACCAT 1055
|||||||||||| |||| |||||||||||||| || |||||| || | || | |
Sbjct 1007 TGGAAGCTAACAGTTGGAAAGTTTCAGGGTCGAATGAAT-TTATGGGCATG-AGTATCGG 1064
Query 1056 AGACTTCTATAAGTTTACACCCTCCTTGGTCTTTGTCGAGGGAGATGAGCAGGAGATTAT 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 AGACTTCTATAAGTTTACACCCTCCTTGGTCTTTGTCGAGGGAGATGAGCAGGAGATTAT 1124
Query 1116 AGCTTCTACTAGCAAA-CTCATAATCTCTAATCTCACTGCGGTTATGGGACTCATTGATA 1174
|||||||||| | ||| | |||||||||| |||||||||||| |||||||||| |||||
Sbjct 1125 AGCTTCTACT-GAAAAACGCATAATCTCTGCTCTCACTGCGGTGATGGGACTCACTGATA 1183
Query 1175 GAACCTAA 1182
||||||||
Sbjct 1184 GAACCTAA 1191
> AT1G20360.1 | Symbols: | F-box family protein | chr1:7046504-7047744
REVERSE LENGTH=1241
Length=1241
Score = 451 bits (244), Expect = 6e-126
Identities = 793/1044 (76%), Gaps = 93/1044 (9%)
Strand=Plus/Plus
Query 14 CCTTT-CATCTTCTCGACCAGATTCTCTTCAGATTGGACCCCAAATCTCTGGGGATAATG 72
||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||| ||| |||
Sbjct 82 CCTTTGCATCTCCTCGACCAAATTCTTTTCAGATTGGAACCCAAATCTCTGGCGATGATG 141
Query 73 CGATGCACTAATAGATCTATCAATTCGCATATATCCGACGATCCGAATTTTGTAACTGGA 132
|| ||| |||||| ||||||||||||||||||| ||| ||| ||| | | ||
Sbjct 142 AAATCCACAAATAGAACTATCAATTCGCATATATCTGAC---CCG--CTTT-T---T-GA 191
Query 133 TACTCTTCCGAATA-TTCTTCTCGGGTT-GGCTCCAGTTT-TATTCACCTTGGGTGCTAT 189
| |||||||| || ||| | |||| | |||||||| || | ||||| | |
Sbjct 192 -A----TCCGAATACTT-TTC-CCGGTTAGAATCCAGTTTGTA-TAACCTTTCCCCCGGT 243
Query 190 GGCGACTTTTACATCTTCTGCCA-CCATTTGGCCTCTTCATGCGATTCTATGTCAGT-GG 247
|||| | ||| || | ||||| || ||| | |||||||||| | ||||||||| | ||
Sbjct 244 GGCGCCAGATACGTCATGTGCCAGCC-TTTAGTCTCTTCATGCAAATCTATGTCAATGGG 302
Query 248 ACAAAAGAGCAATGTTGACATATCACTT--G-TGTTACTTTTTCGGCTCATGCTCCGGCC 304
|||| ||||| || | | | | || | |||||| | || || |||||||| ||||
Sbjct 303 GGAAAA-AGCAA--TTCA-AGGTAATTTCCGATGTTACATGTTGGGGTCATGCTCTGGCC 358
Query 305 TTCTCTTACTATACAT-GGATGGCCTCTTCGTCGCAAATCCCCTCACAAAGAGGTTTCGA 363
||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTCTCCTACTGTACATCGG-TGGCCTCTTCGTCGCAAATCCCCTCACAAAGAGGTTTCGA 417
Query 364 CGTTTGAATCACT-CTGGCTCAAAGCTTCTGTCTCACG-TATTTGGTGCTACTGTTCCTT 421
|||| ||| || ||||||||||| || | || ||| || ||||| | | | | |
Sbjct 418 TATTTGGATC-CTTCTGGCTCAAAGTTTATACCT-ACGCTAAGTGGTGAT-C-GCTGGAT 473
Query 422 TTTATGACGCTTTACAAGAGAACAAAGCTCGTATAGAGAGAAAGATCTGTGTTGGTTTCG 481
|| || || | | ||| | || | ||||| ||| || |||||||| |
Sbjct 474 TT-AT-----TT-----G-GCACAT--C-CGGA--GAGAGC--GATGTGCGTTGGTTTTG 514
Query 482 TGGTA-AGTCCCACCAA-AGGTTTCAAGATCGTATGCATACTCGAGATGGAAACG-GTGT 538
||| | || | || || || ||||||||| |||||||| |||||||| ||| | ||
Sbjct 515 CGGTTGA-TCG-A--AAGAGATT-CAAGATCGTCTGCATACTTGAGATGGAGACGAG-GT 568
Query 539 ACGGATTCGAGATCAGTGACGGAGATTCATGGAGGTTATCGGAGACAACCATCACCACT- 597
| | |||||| |||| ||||| ||||||||||| ||||| | || || |||| ||
Sbjct 569 ATGAATTCGAAATCAACGACGGCGATTCATGGAGATTATCAAAAACGACTATCAATGCTG 628
Query 598 AGCTCAAAAAGCGAACTCGCGACA-TGGATAAAACCTGTTTACTTGGACGGCACTCTTCA 656
| ||||||||| || ||| | | | ||||| ||||||||||||||||| |||||||||||
Sbjct 629 A-CTCAAAAAGTGATCTCACCA-AGTGGATGAAACCTGTTTACTTGGAAGGCACTCTTCA 686
Query 657 CTGGTTGAGAAACGACGGGAGTATCATAGCTTTCAATCCTGAGACAGAGCAAGCAAGCTT 716
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||
Sbjct 687 TTGGTTGAGAAACGACGGGAGCATCATAGCTTTCAATCCCGAGACAGAGCAAGCACGCTT 746
Query 717 CG-TTCCTTCCA-TATTCCATCGTGGA-GAACCGGATACGAAGCTTCTT--TTCGCGGAA 771
| |||||||| | ||| ||| ||| | |||||||| ||| || || || |||| |
Sbjct 747 -GATTCCTTCCGGTTTTC-ATCA-GGAAGTACCGGATATGAAACTG-TTACTT-GCGGCA 801
Query 772 GAT-AGTAAGAAGAATTGCCTGATCTTAGTATCGGGGACGAAGGAAACAATCTCAGTTTA 830
||| | ||||| ||| || ||| |||| |||| ||||| || ||||||||||||||||
Sbjct 802 GATGA-TAAGATCAATCGCTTGACCTTAATATCAGGGACAAAACAAACAATCTCAGTTTA 860
Query 831 CACACTAGTCAAGAAT-TCCAAATGGGACCTCACCAGGCAGATCGCGAACGTATATATGA 889
|||| || || |||| || ||||||| ||| | |||| |||| |||||||| | |||
Sbjct 861 CACATTACTCGGGAATCTC-AAATGGGGTCTCGCTAGGCGGATCAAGAACGTATCTCTGA 919
Query 890 ACGAAGGA-GAGCTTTTACACTGGCATTTGGTTATGTGCGACGGCAAGTGTCTTGTGGTG 948
| ||| | ||| || | |||| | ||||| ||| ||| |||||| ||||| |||||
Sbjct 920 AAGAAA-ATGAG-TTGAATGCTGGAACATGGTTGTGTACGATGGCAAGCGTCTTCTGGTG 977
Query 949 AGGGAGATGAAGAATATTACTTGTTA--TGGTGTGGTTCATGTGTACGACTTGGAAGCTA 1006
||||||| ||| || | | | | ||| |||||| ||||||||||||||| ||||| |||
Sbjct 978 AGGGAGAAGAAAAAGAAT-CGT-TTAAATGGTGTAGTTCATGTGTACGACATGGAAACTA 1035
Query 1007 ACACTTGGGGAGTTTCAGGGTCGA 1030
||| ||||||||||| ||||||||
Sbjct 1036 ACAGTTGGGGAGTTTTAGGGTCGA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5