BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911866
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20730.1 | Symbols: | Protein of unknown function (DUF833) ... 852 0.0
AT1G20740.1 | Symbols: | Protein of unknown function (DUF833) ... 645 0.0
> AT1G20730.1 | Symbols: | Protein of unknown function (DUF833)
| chr1:7194256-7195575 FORWARD LENGTH=946
Length=946
Score = 852 bits (461), Expect = 0.0
Identities = 618/693 (89%), Gaps = 13/693 (2%)
Strand=Plus/Plus
Query 33 GTCAATAAGAGCGGCGGATTGGGAATGGGATGAAAGCAAGGTATTGAGTGCTCGTTGCGG 92
||||||| || ||||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 81 GTCAATAGGAAAGGCGGCTTGGGAATGGGATGAAAGCCAGGTATTGAGTGGTCGTTGCGC 140
Query 93 AGAGACCGATGGGACGTGGTTAGGTATTTCTTTTCGAGGCCGAGTCGCTTTTCTTGTGGA 152
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 141 AGAGACCGATGGGACGTGGTTAGGTATTTCTATTCGAGGCCGAGTCGCTTTTCTTGTGGA 200
Query 153 GGCAGGGCCCGTTAACAGAGACAGAATCATCGGCGCCGAGCGTCGTACTCTTGAGTTCTT 212
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 201 GGCAGGGCCCGTTAACAGAGACAGAATCATCGGCGCCGAGTGTCGTACTCTTGATTTCTT 260
Query 213 AGAGAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATTAGCTGCAGAT-CGCGGACGTA 271
| |||||||| ||||||||||||||||||| | ||||| ||| |||| | ||||||||
Sbjct 261 AAAGAGCAACTTGAGTCCAGAGGACTTTGCAGATTCATTGGCTTTAGATTC-CGGACGTA 319
Query 272 ACACGCAGATAGCCTATCATCTAATTGTGGCCGACATAGCTTCAAACTCAATGTTATATA 331
||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 320 ACACGGGGATAGCCTATCATCTAATTGTGGCCGACATAGTTTCAAACTCAATGTTTTATA 379
Query 332 TCTCCAAACAGTCTTTCTCTGAAGATGGCACTG-TCCATATA-ATGCCTGTTGGTCCTGG 389
||| ||||| |||||| ||||||||||||| || || ||| | | |||||||||||||||
Sbjct 380 TCTACAAACCGTCTTTGTCTGAAGATGGCA-TGGTCTATACAGA-GCCTGTTGGTCCTGG 437
Query 390 TGTTCATACCCTATCTTCAGCTGGACTCGATTCCGAAGTTGGACACAGGGAATTACGTCT 449
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 438 TGTTCATACCCTATCTTCAGCTGGACTCGATTCCGAAGTTGGACACAGGGACTTACGTCT 497
Query 450 GAAACAG-TCTTTTTCTGAGAGGATTAACAGAAAACTACCAGAGCAAATCT-GGGACCTT 507
||||| | | |||||||||| ||||||||||| |||||||||| | ||||| ||| | ||
Sbjct 498 GAAAC-GCTATTTTTCTGAGCGGATTAACAGAGAACTACCAGAACCAATCTCGGGGC-TT 555
Query 508 GCTGAAGAGATTATGTATGAT-C-G-CGAAGCTATAATCGGAGACCCACTGAGCTCTATT 564
||||| ||| ||||||||||| | | ||||||||||| |||||||||||||||||||||
Sbjct 556 GCTGAGGAGGTTATGTATGATACAGTCGAAGCTATAAACGGAGACCCACTGAGCTCTATC 615
Query 565 TTTGTCGACGACACTATGATTGAACACGAATACTATGGAACAAGAAATACGACAGCATTG 624
||||||| ||||||| |||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 616 TTTGTCGTCGACACTTTGATTGAAAACGAACACTATGGAACAAGATGTACGACAGCATTG 675
Query 625 GTTGTGAGACCCACCAAGGAAGTGTCGTTCGCTGAGAGGAACAGGGCGATATTTAATGCC 684
|||||||||| ||||| | ||||| |||| ||||||| ||||||||| ||||||||
Sbjct 676 GTTGTGAGACGCACCATGCAAGTGAGGTTCTTTGAGAGGTACAGGGCGAGATTTAATGAT 735
Query 685 GATTGGACCATGCACGCCTTCTTTTTCACCATC 717
|| |||| | |||||| |||| |||||||||
Sbjct 736 GACTGGAACGTGCACGACTTCCGGTTCACCATC 768
> AT1G20740.1 | Symbols: | Protein of unknown function (DUF833)
| chr1:7200394-7201538 FORWARD LENGTH=801
Length=801
Score = 645 bits (349), Expect = 0.0
Identities = 597/712 (84%), Gaps = 36/712 (5%)
Strand=Plus/Plus
Query 33 GTCAATAAGAGCGGCGGATTGGGAATGGGA-TGAAA--G-CAAGGTATTGAGTGCTCGTT 88
|||||||||| |||||| |||| | | ||||| | | || |||| |||| |||||
Sbjct 105 GTCAATAAGAAAGGCGGAATGGG-TTAAAACTGAAACTGACCAGATATTAAGTGGTCGTT 163
Query 89 GCGGAGAGACCGATGGGACGTGGTTAGGTATTTCTTTTCGAGGCCGAGTCGCTTTTCTTG 148
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 164 GCCCAGAGACCGATGGGACGTGGTTAGGTATTTCTACTCGAGGCCGAGTCGCTTTTCTTG 223
Query 149 TGGAGGCAGGGCCCGTTAACAGAGACAGAATCATCGGCGCCGAGCGTCGTACTCTTGAGT 208
||||||||||| | |||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 224 TGGAGGCAGGGACTATTAACAGAGACAGATTCAACGGCGCCGAGAGTCGTACTCTTGAGT 283
Query 209 TCTTAGAGAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATTAGCTGCAGATCGCGGAC 268
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 284 TCTTAGAGAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATCGGCTGCAGATTACATAC 343
Query 269 GTAACACGCAGATAGCC---TATCATCTAATTGTGGCCGACATAGCTTCAAACTCAATG- 324
|||||| | | | |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 344 GTAACAAGAACACAGCCGCCTTTCATCTAATTGTGGCCGACATAGCTTCAAACTCAATGC 403
Query 325 TTATATATCTCCAAACAGTC-TTTCTCTGAAGATGGCACTGTCCATATA-ATGCCTGTTG 382
|| ||||||||||||| | | ||||||||| |||||| |||| ||| | | ||||||||
Sbjct 404 TT-TATATCTCCAAACCG-CGTTTCTCTGACTATGGCATTGTCTATACAGA-GCCTGTTG 460
Query 383 GTCCTGGTGTTCATACCCTATCTTCAGCTGGACTCGATTCCGAAGTTGGACACAGGGAAT 442
||||||||||||| || |||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 461 GTCCTGGTGTTCACACACTATCTTCAGCTGGACTCGATTCCGACGTTGGATACAGGGACT 520
Query 443 TACGTCTGAAACAGTCTTTTTCTGAGAGGATTAACAGA-AA--ACTACCAGAGCAAATCT 499
||||| ||| ||| ||||||| ||||| |||||||||| || ||||||| ||| |
Sbjct 521 TACGTATGAGACACTCTTTTTGTGAGATGATTAACAGAGAACGACTACCAC--CAA-TAA 577
Query 500 GGGACCTTGCTGAAGAGATTATGTATGATC--G-CGAAGCT-AT-AAT-CGGAGACCCAC 553
||||| ||||||| || |||||||||||| | | ||||| | || || | | ||
Sbjct 578 GGGACATTGCTGA-GA--TTATGTATGATCCAGTCAAAGCTTACGAAAGCGT-G-CT-AC 631
Query 554 TGAGCTCTATTTTTGTCGACGACACT-ATGATTGAACACGAATACTATGGAACAAGAAAT 612
|||||||||||||| ||| ||||| | | ||||| | ||||| ||||||||||||||| |
Sbjct 632 TGAGCTCTATTTTTTTCGTCGACA-TGAAGATTGGATACGAACACTATGGAACAAGAATT 690
Query 613 ACGACAGCATTGGTTGTGAGACCCACCAAGGAAGTGTCGTTCGCTGAGAGGAACAGGGCG 672
||||||||||||||||||| || |||||||||||||| |||| ||||||| |||||| |
Sbjct 691 ACGACAGCATTGGTTGTGAAACGCACCAAGGAAGTGTTGTTCTTTGAGAGGTACAGGGAG 750
Query 673 ATATTTAATGCCGATTGG-ACCATGCACGCCTTCTTTTTCACCATCATCTAG 723
|||||||||| |||||| || | |||| |||| |||||||||||||||
Sbjct 751 ATATTTAATGATGATTGGGACGAC-CACGACTTCGCGTTCACCATCATCTAG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5