BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911870

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20680.1 | Symbols:  | Protein of unknown function (DUF833) ...   102    5e-21


> AT1G20680.1 | Symbols:  | Protein of unknown function (DUF833) 
| chr1:7169402-7170796 FORWARD LENGTH=1010
Length=1010

 Score =  102 bits (55),  Expect = 5e-21
 Identities = 95/114 (83%), Gaps = 4/114 (4%)
 Strand=Plus/Plus

Query  669  CTTTGGAACAACAAGTACGACAGCATTGGTGGTGGAACGCACTGGGAGA-GTAAGGGTCT  727
            |||||||||||||||||||||||||||||| ||| |||||||| | ||| || | | |||
Sbjct  678  CTTTGGAACAACAAGTACGACAGCATTGGTTGTGAAACGCACTAG-AGAAGTGATGCTCT  736

Query  728  TTGAGAGGTACATG-ATGGAGAATGGTACATATAACACGCACGATTTCGATTTC  780
            |||||| ||||||| | | |||||||| |||  |||||| || | |||| ||||
Sbjct  737  TTGAGAAGTACATGGA-GCAGAATGGTGCATGGAACACGAACAACTTCGCTTTC  789



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38981698072


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5