BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911874

Length=1137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20360.1 | Symbols:  | F-box family protein | chr1:7046504-7...   255    5e-67


> AT1G20360.1 | Symbols:  | F-box family protein | chr1:7046504-7047744 
REVERSE LENGTH=1241
Length=1241

 Score =  255 bits (138),  Expect = 5e-67
 Identities = 276/340 (81%), Gaps = 20/340 (6%)
 Strand=Plus/Plus

Query  569   AACGACGAGAGCATCATAGCTTTCAATCCCGAGACAGAGCAAGCACACTTGATTCCTTCC  628
             ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  697   AACGACGGGAGCATCATAGCTTTCAATCCCGAGACAGAGCAAGCACGCTTGATTCCTTCC  756

Query  629   A-TATTCTATCGGGAA-T-C-GGATATGAAGTTATTA-TTCGCGGCGGAC-ATAATATCA  682
               | ||| ||| |||| | | |||||||||  | ||| || ||||| ||  |||| ||||
Sbjct  757   GGTTTTC-ATCAGGAAGTACCGGATATGAAACTGTTACTT-GCGGCAGATGATAAGATCA  814

Query  683   ATCGTTTGACCTTATTATTGGGGACGAAAGAAACAATCTCAGTTTACGCACTACGCAAGA  742
             |||| ||||||||| |||  ||||| ||| ||||||||||||||||| || ||| |  ||
Sbjct  815   ATCGCTTGACCTTAATATCAGGGACAAAACAAACAATCTCAGTTTACACATTACTCGGGA  874

Query  743   AT-TCCAA-GTGGATCCTTGCTAGGCAGATCAAGAACGTATCTATGGAAGATAAT-ATTC  799
             || || || | || || | ||||||| |||||||||||||||| || |||| ||| | | 
Sbjct  875   ATCTCAAATGGGG-TC-TCGCTAGGCGGATCAAGAACGTATCTCTGAAAGAAAATGAGT-  931

Query  800   TTGAACGCTGGAACATGGTTGCATACGATGGCAAGCATCTTGTGGTGAGGGAGATGAAG-  858
             | ||| |||||||||||||||  ||||||||||||| |||| |||||||||||| |||  
Sbjct  932   T-GAATGCTGGAACATGGTTGTGTACGATGGCAAGCGTCTTCTGGTGAGGGAGAAGAAAA  990

Query  859   -GA-TAGATTAAGA-GTTGTGGTTCCTTTTTACGACATGG  895
              || | | |||| | | ||| |||| | | ||||||||||
Sbjct  991   AGAATCGTTTAA-ATGGTGTAGTTCATGTGTACGACATGG  1029



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55772805495


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5