BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911875
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20680.1 | Symbols: | Protein of unknown function (DUF833) ... 159 3e-38
> AT1G20680.1 | Symbols: | Protein of unknown function (DUF833)
| chr1:7169402-7170796 FORWARD LENGTH=1010
Length=1010
Score = 159 bits (86), Expect = 3e-38
Identities = 546/751 (73%), Gaps = 99/751 (13%)
Strand=Plus/Plus
Query 111 AGGGATCATAAGTGGGGCATCTTGGAATGGAAATGGCCAGATTTTGAGTGGTCGTTCCGC 170
|||| ||||||||||||||||||||| | |||| || ||||||||||||||||| | |
Sbjct 106 AGGG-TCATAAGTGGGGCATCTTGGAGTCGAAACGGTCAGATTTTGAGTGGTCGGTGCAA 164
Query 171 AGATAACGGCGGAACGTGGTTTGGTATTTCTAGAGGAGGTCGAGTCGCTTTTCTCGTGAG 230
|| |||| |||||| |||||||||||| ||| ||| || |||||||||||||||||||
Sbjct 165 AGCTAACAACGGAACCTGGTTTGGTATTACTAAAGGTGGCCGAGTCGCTTTTCTCGTGAA 224
Query 231 T--GTCGATACATTGTTAGACCACGTCGA-TCCACA-AGCCGGCTCTGAGTTGTACCCAA 286
| ||| | ||||| |||| || | | || | || |||||| |||||||| ||
Sbjct 225 TACATCG-T-TGTTGTTGGACCGTGTTAAGT-CATACAG-CGGCTCGGAGTTGTATCC-- 278
Query 287 TTGAATTCTTGGAGGGCAATATGACTCCCCAGGACTTTGCCAATGACGTGGCACAG-G-G 344
| ||||| |||| ||| || | |||||||| || || | | || |
Sbjct 279 -------C------GGCAACATGAGTCCAGAGCAGTTTGCCAACGAAGT-G-AAAGTGCA 323
Query 345 TGAAGAAGTG-GACGAAT-TATTG--T-CGTTTAGCCTTATAGTTGCAGACATGACTTTG 399
|||| ||| | ||| ||| | | | | | ||| ||| | |||||||||||||||| |
Sbjct 324 TGAA-AAG-GAGACTAATGAAAGGCATGCCTATAGTCTTGTCGTTGCAGACATGACTTCG 381
Query 400 AATTCAATGGTTCATATAAGGAAACCCGT-GCA-AGCTGAGT-GGAATGTCATGATACA- 455
| ||||||||||||||| ||||||| | | | | || ||| | ||||| ||||| |
Sbjct 382 AGTTCAATGGTTCATATCCTGAAACCC-TCGGATA-CTAAGTCTG-ATGTCGTGATAGAG 438
Query 456 ACCCGTTCCGTTTGGTGTGCATACACTTTCTCCTTACGAGGGTCTCGATGCCATAGAACC 515
| | ||||||||||||||||||||||||||| ||||||| ||||||||| | | | |
Sbjct 439 A-CTGTTCCGTTTGGTGTGCATACACTTTCTTCTTACGAAGGTCTCGAT-TC-T---A-C 491
Query 516 TTGGGTAATTATTAAGTACAAGTGTCTTGATTTACTCGTGTTTGACG-TT-TTTAATCAG 573
| ||| | | | || | ||||||||| || |||| || |||| |||
Sbjct 492 ---AG--ATT-CT--G--CCAG-G----GATTTACTCCTG--AGACGCTTGTTTACCCAG 534
Query 574 ATGACTGCTGAA-TTGGGAAACAACCCACTACCACCCCTTAAGGAGATTGCTGGGA---T 629
||| || | || ||||||||| | || || || | ||||||||||||||| |
Sbjct 535 ATGGTTGGT-AATTTGGGAAACGTTCAACAACGACAGATGGAGGAGATTGCTGGGAGGTT 593
Query 630 TATGTACGATGATGC--GGAAGAAGAAGACGCGGTGTTTCT-CCA-A-TTG-GCTGCGCA 683
|||||| |||| | | | | |||| ||||||||||||| | ||| | | | | || |||
Sbjct 594 TATGTATGATGCT-CAAGCAGGAAG-AGACGCGGTGTTT-TACCATAGTAGAGATGAGCA 650
Query 684 TCC------ACAATTTGGAATGCAACTCTTTGGAACAACAAGTACGACAGCATTGGCGGT 737
||| | || |||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 651 TCCTAATGGAAAACTTGGAACGCAACGCTTTGGAACAACAAGTACGACAGCATTGGTTGT 710
Query 738 GGAACGCACTGGGAGA-GCAAGGCTCTTTGAGAGGTACA-G-A-CTCGA-TGGTGGATGG 792
| |||||||| | ||| | | ||||||||||| ||||| | | | || ||||| ||||
Sbjct 711 GAAACGCACTAG-AGAAGTGATGCTCTTTGAGAAGTACATGGAGCA-GAATGGTGCATGG 768
Query 793 CACAC-ACACGACTTCGATTTCCAA-ATCCA 821
|||| | || |||||| |||| || |||||
Sbjct 769 AACACGA-ACAACTTCGCTTTC-AACATCCA 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5