BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg911886 Length=666 Score E Sequences producing significant alignments: (Bits) Value AT1G20515.1 | Symbols: | other RNA | chr1:7106165-7107977 FORW... 1077 0.0 AT1G20520.1 | Symbols: | Arabidopsis protein of unknown functi... 1077 0.0 > AT1G20515.1 | Symbols: | other RNA | chr1:7106165-7107977 FORWARD LENGTH=1143 Length=1143 Score = 1077 bits (583), Expect = 0.0 Identities = 641/667 (96%), Gaps = 11/667 (2%) Strand=Plus/Minus Query 11 AGAACTACAAGACTGCGCAAACTATCTTCTCGATCACTGTCCAGAAGCAAGAGA------ 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 754 AGAACTACAAGACTGCGCAAACTATCTTCTCGATCACTGTCCAGAAGCAAGAGAGTCTCT 695 Query 65 GT--CAACAAGGGAAAGAGAACTGGATCGAGCAAGTCTCTGAAGCTTCACTAATAATGTT 122 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 694 GTGCCAACAAGGGAAAGAGAACTGGATCGAGCAAGTCTCTGAAGCTTCACTAATAATGTT 635 Query 123 AGATGTCTGTAATGTGTCGAAAGATGTCATGGCACTCGTGAGACATGGCCTGCAAGATCT 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 634 AGATGTCTGTAATGTGTCGAAAGATGTCATGGCACTCGTGAGACATGGCCTGCAAGATCT 575 Query 183 TCAACTGACTCTGCGCTGTAATGAATCAAACCTCAGTGAGAAGATCGCAGCGTATAATCG 242 ||||||||||||||||||||||| ||||||||| ||||| ||| | |||||||||||||| Sbjct 574 TCAACTGACTCTGCGCTGTAATGGATCAAACCTTAGTGAAAAGGTTGCAGCGTATAATCG 515 Query 243 GTATAGGAACAAGCTCAAGAAGGAAACGCTCAAGTGTTTAAATAGTCTAAAGAGTATTGA 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 514 GTATAGGAACAAGCTCAAGAAGGAAACGCTCAAGTGTTTAAATAGTCTAAAGAGTATTGA 455 Query 303 CGGAGGA---AGAGGGATGATGGAGATGCAGAGCATAGAGCAGAACCTTCTGTTTGTTGC 359 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 454 AGGAGGAGGGAGAGGGATGATGGAGATGCAGAGCATAGAGCAGAACCTTCTGTTTGTTGC 395 Query 360 TGAGGTTTTGAGAGAAGTGAGAAGAGCTGTTGTGACTATGGTTGAGTCTCTGTTCTCACT 419 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 394 TGAGGTTTTGAAAGAAGTGAGAAGAGCCGTTGTGACTATGGTTGAGTCTCTGTTCTCACT 335 Query 420 CGTGTGTGTTCCTTGGCTCGAGAGAAAACCGAGCATAGGGTCATATTCTTCTATCTTTAC 479 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 334 CGTATGTGTTCCTTGGCTCGAGAGAAAACCGAGCATAGGGTCATTTTCTTCTATCTTTAC 275 Query 480 AATGCAGTTTTGCTGCTTTGATGATGCGTGGGACAAAGTAGCGATGCAGAGCGCAAGTAC 539 ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 274 GATGCAGTTTTGCTGCTTTGATGATGCGTGGGACGAAGTAGCGATGCGGAGCGCAAGTAC 215 Query 540 AAGGTTGGAGGCTGCAGAGATCACTGTTGAGGAGCTTGAGATCGAGTTGGAGTGTATTTT 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214 AAGGTTGGAGGCTGCAGAGATCACTGTTGAGGAGCTTGAGATCGAGTTGGAGTGTATTTT 155 Query 600 CCGGCGACTGATTCAGACCAGAGTTTCACTTCTTAATATTCTTACAGCTAAGACGTCTCC 659 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 154 CCGGCGACTGATTCAGACCAGAGTTTCACTTCTTAATATTCTTACAGCTAAAACATCTCC 95 Query 660 GGTTTGA 666 ||||||| Sbjct 94 GGTTTGA 88 > AT1G20520.1 | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr1:7106922-7107617 REVERSE LENGTH=696 Length=696 Score = 1077 bits (583), Expect = 0.0 Identities = 641/667 (96%), Gaps = 11/667 (2%) Strand=Plus/Plus Query 11 AGAACTACAAGACTGCGCAAACTATCTTCTCGATCACTGTCCAGAAGCAAGAGA------ 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30 AGAACTACAAGACTGCGCAAACTATCTTCTCGATCACTGTCCAGAAGCAAGAGAGTCTCT 89 Query 65 GT--CAACAAGGGAAAGAGAACTGGATCGAGCAAGTCTCTGAAGCTTCACTAATAATGTT 122 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 90 GTGCCAACAAGGGAAAGAGAACTGGATCGAGCAAGTCTCTGAAGCTTCACTAATAATGTT 149 Query 123 AGATGTCTGTAATGTGTCGAAAGATGTCATGGCACTCGTGAGACATGGCCTGCAAGATCT 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 150 AGATGTCTGTAATGTGTCGAAAGATGTCATGGCACTCGTGAGACATGGCCTGCAAGATCT 209 Query 183 TCAACTGACTCTGCGCTGTAATGAATCAAACCTCAGTGAGAAGATCGCAGCGTATAATCG 242 ||||||||||||||||||||||| ||||||||| ||||| ||| | |||||||||||||| Sbjct 210 TCAACTGACTCTGCGCTGTAATGGATCAAACCTTAGTGAAAAGGTTGCAGCGTATAATCG 269 Query 243 GTATAGGAACAAGCTCAAGAAGGAAACGCTCAAGTGTTTAAATAGTCTAAAGAGTATTGA 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 270 GTATAGGAACAAGCTCAAGAAGGAAACGCTCAAGTGTTTAAATAGTCTAAAGAGTATTGA 329 Query 303 CGGAGGA---AGAGGGATGATGGAGATGCAGAGCATAGAGCAGAACCTTCTGTTTGTTGC 359 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 330 AGGAGGAGGGAGAGGGATGATGGAGATGCAGAGCATAGAGCAGAACCTTCTGTTTGTTGC 389 Query 360 TGAGGTTTTGAGAGAAGTGAGAAGAGCTGTTGTGACTATGGTTGAGTCTCTGTTCTCACT 419 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 390 TGAGGTTTTGAAAGAAGTGAGAAGAGCCGTTGTGACTATGGTTGAGTCTCTGTTCTCACT 449 Query 420 CGTGTGTGTTCCTTGGCTCGAGAGAAAACCGAGCATAGGGTCATATTCTTCTATCTTTAC 479 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 450 CGTATGTGTTCCTTGGCTCGAGAGAAAACCGAGCATAGGGTCATTTTCTTCTATCTTTAC 509 Query 480 AATGCAGTTTTGCTGCTTTGATGATGCGTGGGACAAAGTAGCGATGCAGAGCGCAAGTAC 539 ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 510 GATGCAGTTTTGCTGCTTTGATGATGCGTGGGACGAAGTAGCGATGCGGAGCGCAAGTAC 569 Query 540 AAGGTTGGAGGCTGCAGAGATCACTGTTGAGGAGCTTGAGATCGAGTTGGAGTGTATTTT 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 570 AAGGTTGGAGGCTGCAGAGATCACTGTTGAGGAGCTTGAGATCGAGTTGGAGTGTATTTT 629 Query 600 CCGGCGACTGATTCAGACCAGAGTTTCACTTCTTAATATTCTTACAGCTAAGACGTCTCC 659 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 630 CCGGCGACTGATTCAGACCAGAGTTTCACTTCTTAATATTCTTACAGCTAAAACATCTCC 689 Query 660 GGTTTGA 666 ||||||| Sbjct 690 GGTTTGA 696 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32200088227 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5