BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911886
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20515.1 | Symbols: | other RNA | chr1:7106165-7107977 FORW... 1077 0.0
AT1G20520.1 | Symbols: | Arabidopsis protein of unknown functi... 1077 0.0
> AT1G20515.1 | Symbols: | other RNA | chr1:7106165-7107977 FORWARD
LENGTH=1143
Length=1143
Score = 1077 bits (583), Expect = 0.0
Identities = 641/667 (96%), Gaps = 11/667 (2%)
Strand=Plus/Minus
Query 11 AGAACTACAAGACTGCGCAAACTATCTTCTCGATCACTGTCCAGAAGCAAGAGA------ 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 AGAACTACAAGACTGCGCAAACTATCTTCTCGATCACTGTCCAGAAGCAAGAGAGTCTCT 695
Query 65 GT--CAACAAGGGAAAGAGAACTGGATCGAGCAAGTCTCTGAAGCTTCACTAATAATGTT 122
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GTGCCAACAAGGGAAAGAGAACTGGATCGAGCAAGTCTCTGAAGCTTCACTAATAATGTT 635
Query 123 AGATGTCTGTAATGTGTCGAAAGATGTCATGGCACTCGTGAGACATGGCCTGCAAGATCT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 AGATGTCTGTAATGTGTCGAAAGATGTCATGGCACTCGTGAGACATGGCCTGCAAGATCT 575
Query 183 TCAACTGACTCTGCGCTGTAATGAATCAAACCTCAGTGAGAAGATCGCAGCGTATAATCG 242
||||||||||||||||||||||| ||||||||| ||||| ||| | ||||||||||||||
Sbjct 574 TCAACTGACTCTGCGCTGTAATGGATCAAACCTTAGTGAAAAGGTTGCAGCGTATAATCG 515
Query 243 GTATAGGAACAAGCTCAAGAAGGAAACGCTCAAGTGTTTAAATAGTCTAAAGAGTATTGA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GTATAGGAACAAGCTCAAGAAGGAAACGCTCAAGTGTTTAAATAGTCTAAAGAGTATTGA 455
Query 303 CGGAGGA---AGAGGGATGATGGAGATGCAGAGCATAGAGCAGAACCTTCTGTTTGTTGC 359
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AGGAGGAGGGAGAGGGATGATGGAGATGCAGAGCATAGAGCAGAACCTTCTGTTTGTTGC 395
Query 360 TGAGGTTTTGAGAGAAGTGAGAAGAGCTGTTGTGACTATGGTTGAGTCTCTGTTCTCACT 419
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 394 TGAGGTTTTGAAAGAAGTGAGAAGAGCCGTTGTGACTATGGTTGAGTCTCTGTTCTCACT 335
Query 420 CGTGTGTGTTCCTTGGCTCGAGAGAAAACCGAGCATAGGGTCATATTCTTCTATCTTTAC 479
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 334 CGTATGTGTTCCTTGGCTCGAGAGAAAACCGAGCATAGGGTCATTTTCTTCTATCTTTAC 275
Query 480 AATGCAGTTTTGCTGCTTTGATGATGCGTGGGACAAAGTAGCGATGCAGAGCGCAAGTAC 539
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 274 GATGCAGTTTTGCTGCTTTGATGATGCGTGGGACGAAGTAGCGATGCGGAGCGCAAGTAC 215
Query 540 AAGGTTGGAGGCTGCAGAGATCACTGTTGAGGAGCTTGAGATCGAGTTGGAGTGTATTTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 AAGGTTGGAGGCTGCAGAGATCACTGTTGAGGAGCTTGAGATCGAGTTGGAGTGTATTTT 155
Query 600 CCGGCGACTGATTCAGACCAGAGTTTCACTTCTTAATATTCTTACAGCTAAGACGTCTCC 659
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 154 CCGGCGACTGATTCAGACCAGAGTTTCACTTCTTAATATTCTTACAGCTAAAACATCTCC 95
Query 660 GGTTTGA 666
|||||||
Sbjct 94 GGTTTGA 88
> AT1G20520.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr1:7106922-7107617 REVERSE LENGTH=696
Length=696
Score = 1077 bits (583), Expect = 0.0
Identities = 641/667 (96%), Gaps = 11/667 (2%)
Strand=Plus/Plus
Query 11 AGAACTACAAGACTGCGCAAACTATCTTCTCGATCACTGTCCAGAAGCAAGAGA------ 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 30 AGAACTACAAGACTGCGCAAACTATCTTCTCGATCACTGTCCAGAAGCAAGAGAGTCTCT 89
Query 65 GT--CAACAAGGGAAAGAGAACTGGATCGAGCAAGTCTCTGAAGCTTCACTAATAATGTT 122
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 GTGCCAACAAGGGAAAGAGAACTGGATCGAGCAAGTCTCTGAAGCTTCACTAATAATGTT 149
Query 123 AGATGTCTGTAATGTGTCGAAAGATGTCATGGCACTCGTGAGACATGGCCTGCAAGATCT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 AGATGTCTGTAATGTGTCGAAAGATGTCATGGCACTCGTGAGACATGGCCTGCAAGATCT 209
Query 183 TCAACTGACTCTGCGCTGTAATGAATCAAACCTCAGTGAGAAGATCGCAGCGTATAATCG 242
||||||||||||||||||||||| ||||||||| ||||| ||| | ||||||||||||||
Sbjct 210 TCAACTGACTCTGCGCTGTAATGGATCAAACCTTAGTGAAAAGGTTGCAGCGTATAATCG 269
Query 243 GTATAGGAACAAGCTCAAGAAGGAAACGCTCAAGTGTTTAAATAGTCTAAAGAGTATTGA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 GTATAGGAACAAGCTCAAGAAGGAAACGCTCAAGTGTTTAAATAGTCTAAAGAGTATTGA 329
Query 303 CGGAGGA---AGAGGGATGATGGAGATGCAGAGCATAGAGCAGAACCTTCTGTTTGTTGC 359
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 AGGAGGAGGGAGAGGGATGATGGAGATGCAGAGCATAGAGCAGAACCTTCTGTTTGTTGC 389
Query 360 TGAGGTTTTGAGAGAAGTGAGAAGAGCTGTTGTGACTATGGTTGAGTCTCTGTTCTCACT 419
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 390 TGAGGTTTTGAAAGAAGTGAGAAGAGCCGTTGTGACTATGGTTGAGTCTCTGTTCTCACT 449
Query 420 CGTGTGTGTTCCTTGGCTCGAGAGAAAACCGAGCATAGGGTCATATTCTTCTATCTTTAC 479
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 450 CGTATGTGTTCCTTGGCTCGAGAGAAAACCGAGCATAGGGTCATTTTCTTCTATCTTTAC 509
Query 480 AATGCAGTTTTGCTGCTTTGATGATGCGTGGGACAAAGTAGCGATGCAGAGCGCAAGTAC 539
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 510 GATGCAGTTTTGCTGCTTTGATGATGCGTGGGACGAAGTAGCGATGCGGAGCGCAAGTAC 569
Query 540 AAGGTTGGAGGCTGCAGAGATCACTGTTGAGGAGCTTGAGATCGAGTTGGAGTGTATTTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 AAGGTTGGAGGCTGCAGAGATCACTGTTGAGGAGCTTGAGATCGAGTTGGAGTGTATTTT 629
Query 600 CCGGCGACTGATTCAGACCAGAGTTTCACTTCTTAATATTCTTACAGCTAAGACGTCTCC 659
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 630 CCGGCGACTGATTCAGACCAGAGTTTCACTTCTTAATATTCTTACAGCTAAAACATCTCC 689
Query 660 GGTTTGA 666
|||||||
Sbjct 690 GGTTTGA 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5