BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911904

Length=753
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20680.1 | Symbols:  | Protein of unknown function (DUF833) ...   835    0.0  
  AT1G20740.1 | Symbols:  | Protein of unknown function (DUF833) ...   110    3e-23


> AT1G20680.1 | Symbols:  | Protein of unknown function (DUF833) 
| chr1:7169402-7170796 FORWARD LENGTH=1010
Length=1010

 Score =  835 bits (452),  Expect = 0.0
 Identities = 632/715 (88%), Gaps = 27/715 (4%)
 Strand=Plus/Plus

Query  45   GGTCATAAGTGGGGCATCTTGGAGTCGAAACGGCCAGATTTTGAGTGGTCGGTGCAAAGC  104
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  108  GGTCATAAGTGGGGCATCTTGGAGTCGAAACGGTCAGATTTTGAGTGGTCGGTGCAAAGC  167

Query  105  TAACAACGGAACGTGGTTTGGTATTACTAAACGAGGCCGAGTCGCTTCTCTCGTGAATAC  164
            |||||||||||| |||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct  168  TAACAACGGAACCTGGTTTGGTATTACTAAAGGTGGCCGAGTCGCTTTTCTCGTGAATAC  227

Query  165  ATCGTTGTTGTTAGACCGCCTTAAGGCAAACGGCGGCTCGGAGTTGTATCCCGTTCATTT  224
            |||||||||||| |||||  ||||| || || |||||||||||||||||  |   |    
Sbjct  228  ATCGTTGTTGTTGGACCGTGTTAAGTCATACAGCGGCTCGGAGTTGTAT--C---C----  278

Query  225  CTTGGAGGGCAATATGAGTCCAGACCAGTTTGCCAACGAACTGAGACTGCATGAAAAGCA  284
            |      ||||| ||||||||||| ||||||||||||||| ||| | ||||||||||| |
Sbjct  279  C------GGCAACATGAGTCCAGAGCAGTTTGCCAACGAAGTGAAAGTGCATGAAAAGGA  332

Query  285  GAGTAATGAAAGGCATGTCTATAGTCTTATCGTTGCAGACATGACTTCGAGTTCAATGGT  344
            || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct  333  GACTAATGAAAGGCATGCCTATAGTCTTGTCGTTGCAGACATGACTTCGAGTTCAATGGT  392

Query  345  TCATATCCTGAAACCCTTGGATACTAAGTCGGATGTCATAATAGAGACCGTTCCGTTTGG  404
            ||||||||||||||||| |||||||||||| |||||| | |||||||| |||||||||||
Sbjct  393  TCATATCCTGAAACCCTCGGATACTAAGTCTGATGTCGTGATAGAGACTGTTCCGTTTGG  452

Query  405  TGTGCATACACTTTCTTCTTACCAGGGCCTCGATTCCACAGAATCTTCCAGGGATTCACG  464
            |||||||||||||||||||||| | || |||||||| ||||| ||| ||||||||| || 
Sbjct  453  TGTGCATACACTTTCTTCTTACGAAGGTCTCGATTCTACAGATTCTGCCAGGGATTTACT  512

Query  465  CCTGAGAGGCCTT-TTTAGCCAGATGATTGTTGATTTGGGAAACATTGAAAAATC-ACAG  522
            ||||||| || || |||| ||||||| ||| | ||||||||||| || || || | ||||
Sbjct  513  CCTGAGACGC-TTGTTTACCCAGATGGTTGGTAATTTGGGAAACGTTCAACAA-CGACAG  570

Query  523  ATGGAGGGGATTGCTGGAAGGTTTATGTATGATGCTGCAGG-AGGAAGAGACGCGGTGTT  581
            ||||||| ||||||||| |||||||||||||||||| || | ||||||||||||||||||
Sbjct  571  ATGGAGGAGATTGCTGGGAGGTTTATGTATGATGCT-CAAGCAGGAAGAGACGCGGTGTT  629

Query  582  TCT-CCAAACTAGAGATGATCATCCTTCTGGAAATCTTGGAA-GCCAACGCTTTGGAACA  639
            | | ||| | ||||||||| ||||||  |||||| ||||||| || ||||||||||||||
Sbjct  630  T-TACCATAGTAGAGATGAGCATCCTAATGGAAAACTTGGAACGC-AACGCTTTGGAACA  687

Query  640  ACAAGTACGACAGCATTGGTTGTGAAACGCACCA-AGGAAGTGATGCTCTTTGAGAGGTA  698
            |||||||||||||||||||||||||||||||| | || |||||||||||||||||| |||
Sbjct  688  ACAAGTACGACAGCATTGGTTGTGAAACGCACTAGAG-AAGTGATGCTCTTTGAGAAGTA  746

Query  699  CATGGAGGAGAATGGTGCATGGACCAAGAACCACTTCGCTTTCAACATCCAGTAG  753
            ||||||| ||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct  747  CATGGAGCAGAATGGTGCATGGAACACGAACAACTTCGCTTTCAACATCCAGTAG  801


> AT1G20740.1 | Symbols:  | Protein of unknown function (DUF833) 
| chr1:7200394-7201538 FORWARD LENGTH=801
Length=801

 Score =  110 bits (59),  Expect = 3e-23
 Identities = 73/80 (91%), Gaps = 0/80 (0%)
 Strand=Plus/Plus

Query  626  AACGCTTTGGAACAACAAGTACGACAGCATTGGTTGTGAAACGCACCAAGGAAGTGATGC  685
            ||| || |||||||| || ||||||||||||||||||||||||||||||||||||| || 
Sbjct  671  AACACTATGGAACAAGAATTACGACAGCATTGGTTGTGAAACGCACCAAGGAAGTGTTGT  730

Query  686  TCTTTGAGAGGTACATGGAG  705
            ||||||||||||||| ||||
Sbjct  731  TCTTTGAGAGGTACAGGGAG  750



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36570459016


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5