BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911913
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20680.1 | Symbols: | Protein of unknown function (DUF833) ... 392 2e-108
> AT1G20680.1 | Symbols: | Protein of unknown function (DUF833)
| chr1:7169402-7170796 FORWARD LENGTH=1010
Length=1010
Score = 392 bits (212), Expect = 2e-108
Identities = 381/461 (83%), Gaps = 18/461 (4%)
Strand=Plus/Plus
Query 338 CCTATAGCCTTATAGTCGCAGACATGACTTTGAATTCAATGATTCATATCAGGAAACCCT 397
||||||| ||| | || ||||||||||||| || ||||||| |||||||| ||||||||
Sbjct 350 CCTATAGTCTTGTCGTTGCAGACATGACTTCGAGTTCAATGGTTCATATCCTGAAACCCT 409
Query 398 CGCA-AC-AAGTGCCAATTGTCATAATACA-ACCCGTTCCGTTTGGTGTTCATACACTTT 454
|| | || |||| | | |||| | ||| | | | |||||||||||||| ||||||||||
Sbjct 410 CGGATACTAAGT-CTGA-TGTCGTGATAGAGA-CTGTTCCGTTTGGTGTGCATACACTTT 466
Query 455 CTCCTTTGGAAGGTCTCGATTCCACAGAATCTCCCAGGGATTTA-TGCCTGAAAAGCTTG 513
|| ||| |||||||||||||| ||||| ||| ||||||||||| | ||||| | |||||
Sbjct 467 CTTCTTACGAAGGTCTCGATTCTACAGATTCTGCCAGGGATTTACT-CCTGAGACGCTTG 525
Query 514 TTTAGCCAGATAATTCTTGACTTGGGAAACAATGAACAAGC-ACATATGAACGATAGTGC 572
|||| |||||| || | | ||||||||| | ||||| | ||| ||| | || | |||
Sbjct 526 TTTACCCAGATGGTTGGTAATTTGGGAAACGTTCAACAA-CGACAGATGGAGGAGATTGC 584
Query 573 TGGGAGGTTTATGTATGATTCTGAAGGAAG-AGCATACGGGGTGTTTCGCCAAACTATAC 631
||||||||||||||||||| || ||| | | || | ||| ||||||| ||| | || |
Sbjct 585 TGGGAGGTTTATGTATGATGCTCAAGCAGGAAG-AGACGCGGTGTTTTACCATAGTAGA- 642
Query 632 G-TAACCATCCTTCTGGAGAACTTGGAATGCAACGCTTTGGAACAACAAGTACGACAGCA 690
| | | |||||| |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 643 GATGAGCATCCTAATGGAAAACTTGGAACGCAACGCTTTGGAACAACAAGTACGACAGCA 702
Query 691 TTGGTGGTGAAACGCACTAGAGAAGTGATGCTCTTTGAGAGGTACATGGATG-AGAATGG 749
||||| |||||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 703 TTGGTTGTGAAACGCACTAGAGAAGTGATGCTCTTTGAGAAGTACATGGA-GCAGAATGG 761
Query 750 TACATGGAAGAC-ACACGACTTCGCTTTCAACATCCAGTAG 789
| ||||||| || | || |||||||||||||||||||||||
Sbjct 762 TGCATGGAACACGA-ACAACTTCGCTTTCAACATCCAGTAG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5