BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911918
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20795.1 | Symbols: | F-box family protein | chr1:7226310-7... 1157 0.0
AT1G20800.1 | Symbols: | F-box family protein | chr1:7228718-7... 660 0.0
> AT1G20795.1 | Symbols: | F-box family protein | chr1:7226310-7227566
REVERSE LENGTH=1257
Length=1257
Score = 1157 bits (626), Expect = 0.0
Identities = 969/1128 (86%), Gaps = 50/1128 (4%)
Strand=Plus/Plus
Query 8 GCTTACCTTTGCCTCTCCTCGAAAAGATTTTATTCAAATTGGATCCCAAATCTCTGGCTA 67
|||||||| |||||||| |||||||||| ||||||| ||||||||||| |||||||| ||
Sbjct 14 GCTTACCTCTGCCTCTCTTCGAAAAGATCTTATTCAGATTGGATCCCATATCTCTGGTTA 73
Query 68 TGATGCAATGCACTAGAAGATCTATCAACTCTCATATATCTGACGATCCGTACTTTAAAT 127
||||| ||||||| ||||||||| ||||||| ||||||||||| |||||||| |||||||
Sbjct 74 TGATGAAATGCACGAGAAGATCTTTCAACTCCCATATATCTGAAGATCCGTATTTTAAAT 133
Query 128 CCAAATACTTGTCTGGGGTCGGATCCGGTTTGCTTCAAATCTCCGGCTTTGGCTCCACCA 187
|||| ||||||||||||||| |||||||||||||||| |||||| |||| ||||||| |
Sbjct 134 CCAAGTACTTGTCTGGGGTCAGATCCGGTTTGCTTCACATCTCCAGCTTCGGCTCCAAAA 193
Query 188 CCCTCTTCTGCAACCCTTTCGTCAATTCTAGGTT-ATTCAGAAACAAAGCTTTCTTAGAG 246
|||||||||||||||||||| | |||||| ||| || ||| || | | |||||||||
Sbjct 194 ACCTCTTCTGCAACCCTTTCGGCGATTCTA-GTTCATCCAGGCACCACGATTTCTTAGAT 252
Query 247 ATCA-AATCTCA-GATTCTCTCCTTTTGTTCTGGCCTTCTCCTACTCTTCATCGATGGTC 304
|||| | | | ||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 253 ATCACGA-C-AAGGATTCTCGGCTCTTGTTCTGGCCTCCTCCTACTCTTCATCGATGGTC 310
Query 305 TCTGTGTCGCAAATCCGCTCACAAAGAGGTATCGATTCCTGGATCACTCTAAGTCAATGT 364
|||||||||| |||||||||||||||||||||||||||||| || ||||||| |||||||
Sbjct 311 TCTGTGTCGCGAATCCGCTCACAAAGAGGTATCGATTCCTGAATTACTCTAAATCAATGT 370
Query 365 TTCTTAGTCGTGTTGACAGAAGGGGAAATGTAAGCTTTT-ACCTTCGAT-GGCATAAAAT 422
|||||||||||||||||||| |||||| | ||| |||| |||||| || || | |||||
Sbjct 371 TTCTTAGTCGTGTTGACAGATGGGGAATTCTAAA-TTTTGACCTTCCATCGGAA-AAAAT 428
Query 423 GAATCGCATTGGTTTTGCGGTTGATCAAATTGATCGAACAACTCAG-GCTTTCAAAGTTG 481
||||||| ||||| |||||||||||||||| | | | |||| | || ||||||||
Sbjct 429 GAATCGCCTTGGTCTTGCGGTTGATCAAAT--A---A-C---TCAGAGATT-CAAAGTTG 478
Query 482 TCTGCATGAACGATACTGATG-CTTCGAATCCAGACGAAACCATGTATCAATTCGAGATT 540
||||||||||||| ||||| | ||||| |||| ||||||||||||||||| |||||||||
Sbjct 479 TCTGCATGAACGAAACTGA-GACTTCGGATCCCGACGAAACCATGTATCAGTTCGAGATT 537
Query 541 AGCACTGGAGATTCTTGTTGGAGATTGTCGGAAACAACTATTACTTGCACCGCAAGTGGT 600
||| |||||||| |||||||||||||||| |||||| |||||||||| |||||||| |
Sbjct 538 CTCACAGGAGATTCGTGTTGGAGATTGTCGGCAACAACCATTACTTGCAGCGCAAGTG-T 596
Query 601 C-TCATCAAGGATAAGAAACCGGTTTACTTTGACGGATCTCTTCACTGGTTGAGAAAGGA 659
| |||| | |||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 597 CCTCATTATGGATAAGAAACCTGTTTACTTTGACGGATCTGTTCACTGGTTGAGAAAGGA 656
Query 660 CGGAAGCATTTTAGCTTTCAATCCAGAAACAGAGCAGGCACGGCTGATTCCAATCAAGTT 719
||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 657 CGGAAGCATTTTATCGTTCAATCCAGAAACAGAGCAAGCACGGCTGATTCCAATCAAGTT 716
Query 720 TCCCCCACAACTAAGCTC--TG-C---CAA---CTTGTTCGCAGCCGCAGAGAAGGAACT 770
||||| | ||||| || | || | ||| ||||||| | ||| |||||||||||||
Sbjct 717 TCCCCTAGAACTATGCGCGGTGGCGAACAAGTTCTTGTTCTCCGCCACAGAGAAGGAACT 776
Query 771 AGCATTGATATCAGCGACGGAGGAATTGATTAACGTTTATGCCCTCGAGGATACTCTCAC 830
||||| ||||||||||||||||| |||||||||||||||||||||||| || ||||||
Sbjct 777 TGCATTCATATCAGCGACGGAGGACTTGATTAACGTTTATGCCCTCGAGAATGCTCTCAT 836
Query 831 CGATCCCAAGTGGGTC-TTAGTGAAGCAAATCCCGAACGGAGTGTTGGACAAAGAA-ACA 888
||||| ||||||| | ||||||||||||||| |||||||||| ||| ||| || | |
Sbjct 837 TGATCCTAAGTGGG-CATTAGTGAAGCAAATCAAAAACGGAGTGTCGGA-AAATAAGAAA 894
Query 889 ATGAGGTGCTGGAACGTTGGGGCATACGACGGCGAGT-TCTTAGTGTTGTGGGAAATGAA 947
|| |||| ||||||||||| ||||||||| ||| ||| | |||||||||||||||||| |
Sbjct 895 ATTAGGTACTGGAACGTTGCGGCATACGATGGCAAGTAT-TTAGTGTTGTGGGAAATGTA 953
Query 948 CAACAAGGA-ATGGTACGACGGAGTTGTTCATGGCTACGACTTGAGAGCTAACAATTGGG 1006
||| ||| || ||| |||||||||||||||| |||||||||||||||||||| ||||
Sbjct 954 CAA---GGATATA-TACAACGGAGTTGTTCATGGGTACGACTTGAGAGCTAACAAGTGGG 1009
Query 1007 GAGTCATAGGTTCTGTTCCAGAGTGGTGCGATCGTAATCA-AGTCTTTTACCACTTTAAA 1065
| ||| ||||||| |||||| |||||||||| ||| ||| || ||||||| |||||| |
Sbjct 1010 GGGTCTTAGGTTCGGTTCCATCGTGGTGCGATTGTAGTCATAG-CTTTTACAACTTTACA 1068
Query 1066 CCGTC---TTTCTCCTCTGCGATAGAACTGAATGAGAAGGTCGACGTC 1110
||||| |||||| ||| |||||||||||||| ||||||||||||||
Sbjct 1069 CCGTCGCCTTTCTCTTCTACGATAGAACTGAATAAGAAGGTCGACGTC 1116
> AT1G20800.1 | Symbols: | F-box family protein | chr1:7228718-7231600
REVERSE LENGTH=1479
Length=1479
Score = 660 bits (357), Expect = 0.0
Identities = 537/618 (87%), Gaps = 35/618 (6%)
Strand=Plus/Plus
Query 610 GATAAGAAACCGGTTTACTTTGACGGATCTCTTCACTGGTTGAGAAAGGACGGAAGCATT 669
|||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||
Sbjct 568 GATAAGAAACCGGTTTACTTTGACGGATGTATTCACTGGTTGAGAAAGGACGGGAGCATT 627
Query 670 TTAGC-TTTCAATCCAGAAACAGAGCAGGCACGGCTGATTCCAATCAAGTTTCCCCCACA 728
||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 628 TTAGCATTT-AATCCAGAAACAGAGCAAGCACGGCTGATTCCAATCAAGTTTCCCCTAGA 686
Query 729 ACTAAGCTC--T-GC---CAA---CTTGTTCGCA-GCCGCAGAGAAGGAACTAGCATTGA 778
||||||| | | || ||| |||||||| | ||| |||||||||||||||||||||
Sbjct 687 ACTAAGCGCGGTGGCGAACAAGTTCTTGTTCG-AGGCCACAGAGAAGGAACTAGCATTGA 745
Query 779 TATCAGCGACGGAGGAATTGATTAACGTTTATGCCCTCGAGGATACTCTCACCGATCCCA 838
|||||||||||||||||| ||||||||||||| |||||||||||| ||| | |||||| |
Sbjct 746 TATCAGCGACGGAGGAATCGATTAACGTTTATTCCCTCGAGGATATTCTTATCGATCCTA 805
Query 839 AGTGGGTCTTAGTGAAGCAAATCCCGAACGGAGTGTTGGACAAAGAA-ACAATGAGGTGC 897
||||||||||||||||| |||||| ||||||||||||| ||||| || ||||||||||||
Sbjct 806 AGTGGGTCTTAGTGAAGGAAATCCAGAACGGAGTGTTGCACAAA-AAGACAATGAGGTGC 864
Query 898 TGGAACGTTGGGGCATACGACGGCGAGT-TCTTAGTGTTGTGGGAAATGAACAACAAGGA 956
|||||||||| ||||||| |||| ||| | || ||||||||| |||||||||| ||
Sbjct 865 TGGAACGTTGCGGCATACAACGGTAAGTGT-TTGGTGTTGTGGCAAATGAACAA---GGT 920
Query 957 ATGGTA-CGACGGAGTTGTTCATGGCTACGACTTGAGAGCTAACAATTGGGGAGTCATAG 1015
| | | |||||||| |||| ||| |||||||||||||||||||| |||| ||||||||
Sbjct 921 A-GCTTGCGACGGAGATGTTTTTGGGTACGACTTGAGAGCTAACAAGTGGGAAGTCATAG 979
Query 1016 GTTCTG-TTCCAGAGTGGTGCGATCGTAATCAAGTCTTTTACCACTTTAAACCGTCTTTC 1074
||| | ||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 980 GTTG-GATTCCAGAGTGGTGCGATGGTTATCAAGTCTTTTACCTCTTTAAACCGTCTTTC 1038
Query 1075 TCCTCTGCGATAGAACTGAATGAGAAGGTCGACGTCGAGAC-A--A-T--GGTTCATGGT 1128
|||||||||||||||||||| | ||||||||||| ||||| | | | ||| ||||||
Sbjct 1039 TCCTCTGCGATAGAACTGAAACAAAAGGTCGACGTTGAGACGATGAATATGGTGCATGGT 1098
Query 1129 GATGAT-GAAAATAAACGTATCTCCACTCTAAGCAAAATTATGAGACTGATTGATGAAAT 1187
|||||| | ||||| ||||||||||||||| ||| ||||||| |||||||| |||||
Sbjct 1099 GATGATTGTAAATA----TATCTCCACTCTAAGGAAACTTATGAGCCTGATTGAGGAAAT 1154
Query 1188 CTCACCTTATGCTAAGAG 1205
||||||||||||||||||
Sbjct 1155 CTCACCTTATGCTAAGAG 1172
Score = 111 bits (60), Expect = 1e-23
Identities = 125/155 (81%), Gaps = 9/155 (6%)
Strand=Plus/Plus
Query 1208 GACGTGAAGCGTTTTTGCaaaaaaaTAAAGTTCTTAGGCATGGAGAAAATCAACAAAAGA 1267
||||||| ||||||| |||| || | || |||||||||||||||||||||||||||||||
Sbjct 1264 GACGTGATGCGTTTTAGCAAGAAGAGAAGGTTCTTAGGCATGGAGAAAATCAACAAAAGA 1323
Query 1268 AGAAGAA--GTCAAGT-TCGCAGGCGGAGTC-GGTGT--TAGAGAGCTTTGTGTTCTACG 1321
| ||||| || | || | || || || || ||||| ||||| ||||| || ||||||
Sbjct 1324 AAAAGAACCGTTAGGTCT-GCGGGTAGA-TCTGGTGTAGTAGAGGGCTTTCTGCTCTACG 1381
Query 1322 CCGTTGACGGTTCAATATTCTCGGACCACCGGTGA 1356
|||| |||| ||| |||| ||||| ||| |||||
Sbjct 1382 TCGTT-ACGGCTCAGTATTGTCGGAACACTGGTGA 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5