BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911929

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20890.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   854    0.0  


> AT1G20890.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant 
structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G76480.2); 
Has 33 Blast hits to 33 proteins in 11 species: Archae 
- 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 31; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7265823-7267323 
REVERSE LENGTH=978
Length=978

 Score =  854 bits (462),  Expect = 0.0
 Identities = 551/595 (93%), Gaps = 2/595 (0%)
 Strand=Plus/Plus

Query  1    ATGCTCGATTTACACTACAAAGAATGCTACTTTCTCATCTGTCTTCTCGTCTTCATAAAT  60
            ||| ||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct  120  ATGATCGATTTACGCTATAAAGAATGCTACTTGCTCATCTGTCTTATCGTCTTCATAAAT  179

Query  61   TTTGTGCCTTGTTACAGCGATGAGACACTGTTTGATGGAAAAAGTTTATATGCTGGGAAG  120
            |||||| ||||||| |||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct  180  TTTGTGACTTGTTATAGCGATGAGAGACTGTTTGGTGGAAAAACTTTATATGCTGGGAAG  239

Query  121  GAACTATGGAAGGAGACTCTGCCATTGAAATCTGGATCTCGAGTTTACAAATTACAAGTG  180
            ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct  240  GAACTTTGGAAAGAGACACTGCCATTGAAATCTGGATCTCGAGTTTACAAATTACAAGGG  299

Query  181  CTGAAGTCAAATTCTTGGTATGAAGTCAAGATATCGTACCCAGCTTCTATACCGGCTTTG  240
            || ||||| || ||||||||||||||||||||||| ||||||||||||||||||||| | 
Sbjct  300  CTTAAGTCGAACTCTTGGTATGAAGTCAAGATATCATACCCAGCTTCTATACCGGCTCTA  359

Query  241  TTTACGCTGCAACTACTAAAGAACGGTGTAATGGGTTTGAAGCTTAACCATATGAGGAGA  300
            ||| |||||||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct  360  TTTTCGCTGCAATTACTGAAGAACGGTGTAATGGGTTTGAAGGTTAACCATATGAGGAGA  419

Query  301  TTGCTAAACACTGAGAAGTTGATCTTCAAAACGGAAAGTCTTGAAGAAGTTGATAACAAG  360
            || ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct  420  TTACTAAACACTGAGAAGTTGATCTTCAAAACAGAAAGTATTGAAGAAGTTGATAACAAG  479

Query  361  GACGGATTTTATGTTTTGGTGACTGTGGAACCTGAAGGAATCGTGGCTATACCAAAT-TC  419
            || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | 
Sbjct  480  GAGGGATTGTATGTTTTGGTGACGGTGGAACCTGAAGGAATCGTGGCTATACCAAATGTT  539

Query  420  CAAAGAACGGGCGTCTATCATTTATAACATAGTTTGTGAAGAACAGCTCTTAGGCATCCC  479
             |||||| |  |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  540  -AAAGAAAGACCGTCCATCATTTACAACATAGTTTGTGAAGAACAGCTCTTAGGCATCCC  598

Query  480  TTACTCAAGCTGGTCAGTGGTGGTTTTAGTAGTGTTGTGTCTGGTGGTCGCGTTGATTCT  539
            | ||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct  599  TCACTCAAGCTGGTCAGTGGTGGTTTTAGTAGTTTTGTGTCTCGTTGTCGCGTTGATTCT  658

Query  540  TCCCCGGTTTCTCCCATCTTATCTTCTAATCAAAGATGTAGATCGTGATCGTTAA  594
            ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  659  TCCCCGGTTCCTCCCATCTTATCTTCTGATCAAAGATGTAGATCGTGATCGTTAA  713



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28583229643


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5