BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911935
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20940.1 | Symbols: | F-box family protein | chr1:7295274-7... 843 0.0
> AT1G20940.1 | Symbols: | F-box family protein | chr1:7295274-7296518
REVERSE LENGTH=1245
Length=1245
Score = 843 bits (456), Expect = 0.0
Identities = 573/629 (91%), Gaps = 10/629 (2%)
Strand=Plus/Plus
Query 412 TGGAGATTGTCGGAAACGACAATCACCACTAGCTCAAAAAGTGATCTCACAACGCGAATG 471
|||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 622 TGGAGATTATCGGAAACGAGTATCACCACTAGCTCAAAAAGTGATCTCACTACGCGGATG 681
Query 472 AAACCTGCTTACTTGGACAACACTCTTCACTGGTTGAGAAACGATGGGAGCATTGTATCT 531
||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| | |||
Sbjct 682 AAACCTGTTTACTTGGACAACACTCTTCACTGGCTGAGAAACGATGGCAGCATCATGTCT 741
Query 532 TTTAATCCCGAGACAGAGCGAGCATGTTTGATTCCTTCCATATTTCATCGGGAACCGGAT 591
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 742 TTTAATCCCGAGACAGAGCAAGCATGCTTGATTCCTTCCATATTTCATCGGGAACCGGAT 801
Query 592 ACTAAACTACTTTTCGCGGAAAGCGTTAAAATCAATCGTCTGACCTTAATTTCGGGGACG 651
|| || ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 802 ACGAAGCTACTTTTCGCGGAAAGCGTTAAGATCAATCGCCTGACCCTAATTTCGGGGACG 861
Query 652 ATAGAAACAATATCCGTTTACACACTTCTCGGGAATCACAAATGGGCACTCACAAGGCGG 711
||||||||||| ||||||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 862 ATAGAAACAATCTCCGTTTACACACTTGTCGAGAATCACAAATGGACACTCACAAGGCGG 921
Query 712 ATCAAGAACATATCTATCGATGAA-AACACGCTTGAATGTTGGAACATAGTTGCGTACGA 770
|||||||||||||||||||| ||| || ||||||| || ||||||||||| | ||||||
Sbjct 922 ATCAAGAACATATCTATCGAGGAAGAA-ACGCTTGTATATTGGAACATAGCTATGTACGA 980
Query 771 TGGCAAGTGTCTTGTGGTGAGGGTGAAAAAGAGGGGATTAGAATCTTTTG-AAGGTGTGA 829
|||||||||||||||||||||||||||||||| ||| |||||| |||| | || ||||
Sbjct 981 TGGCAAGTGTCTTGTGGTGAGGGTGAAAAAGATGGGTTTAGAACCTTTGGCAA-GTGTTC 1039
Query 830 TTCATGTGTACGACATGGAAGCTAACAGTTGGGGAGTTTTGGGGTCAACCACTAT--TTG 887
|||||||||||||||||||||||||||||||||||||||||| ||||||| || | |||
Sbjct 1040 TTCATGTGTACGACATGGAAGCTAACAGTTGGGGAGTTTTGGTGTCAACC-CT-TGCTTG 1097
Query 888 GGCCAGTTGCGTCCGAGATTTTTATAAATTTACGCCTTCCTTGTTCTTTGTAGAGGAGGA 947
| ||| ||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1098 GCCCAATTGCGTCCGAGATTTCTATAAATTGACGCCCTCCTTGTTCTTTGTAGAGGAGGA 1157
Query 948 TGAGCAACAGATGGTGCTTGTAGCTTCTGATGACCAACGCATCTCCTATCTAA-TTGCCA 1006
||||||||||| ||||||||| |||||| |||||| ||||||||||||| ||| || | |
Sbjct 1158 TGAGCAACAGAAGGTGCTTGTTGCTTCTAATGACCGACGCATCTCCTATATAAATT-CGA 1216
Query 1007 TTATGGGACTCATTGATACCACCAAGTAA 1035
|||||||||||||||||||||||||||||
Sbjct 1217 TTATGGGACTCATTGATACCACCAAGTAA 1245
Score = 448 bits (242), Expect = 7e-125
Identities = 369/426 (87%), Gaps = 25/426 (6%)
Strand=Plus/Plus
Query 1 ATGGCGATGATGCGATGCACGAACAAATCTATCAAATCGTATTTAAGTGATCCAAGATTT 60
||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 106 ATGGCTATGATGCGATGCACTAACAATTCTATCAAATCATATTTAAGTGATCCAAGATTT 165
Query 61 GGACCTGAATATCCTTCATGGGTCAGATCTAGTTTGTTTAACGTTAGTAGCTATGGCGC- 119
||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 166 GGACCGGAATATCCTTCATGGGTCAGACCTAGTTTGTTTAACCTTGGTAGCTATGGCGCT 225
Query 120 AGTTTATGTATACTGCCAACCTTTGGTCTCTTCATGCGGTTATATGTCACCGGGAAATGA 179
| |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 226 A-CTTATGTATGTTGCCATCCTTTGGTCTCTTCATGCGATTATATGTCACCGGGAAATGG 284
Query 180 AGTAGAGCTGATT-A--GT-GAGC-GA-TGTTACTTTTTCGGTTCATGCTCCGGTCTTCT 233
|||||| ||| || | || | || || |||||| ||||||| |||||||| ||||||||
Sbjct 285 AGTAGAACTGTTTGATGGTAGTGCGGATTGTTACATTTTCGGCTCATGCTCTGGTCTTCT 344
Query 234 CCTATTGTACATCGGTTGCCTCTTTGTCGCAAATCCCTTAACAAAAAGGTTTCGAATCCT 293
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 345 CCTATTGTACATTGGTTGTCTCTTTGTTGCAAATCCCTTAACAAAAAGGTTTCGAATCCT 404
Query 294 GGATCACTCTGGATCAAAGCTTATACCTAA-GATAGTT---GGTGG--T-AATGAT---A 343
|||||| |||||||||||||||||||| || ||||||| ||||| | || | | |
Sbjct 405 GGATCATTCTGGATCAAAGCTTATACC-AATGATAGTTAATGGTGGACTTAAAGGTCTTA 463
Query 344 ----A-T-AGTTATCCTGAAGGTAACATTGCTCGTACAGAAAGAGCGATGTGCGTTGGAT 397
| | |||||||||| |||||| ||||| |||| ||| ||||||||||||||||||
Sbjct 464 GCGGAATTAGTTATCCTGGAGGTAATGTTGCTTGTACGGAACGAGCGATGTGCGTTGGAT 523
Query 398 TTGCGG 403
||||||
Sbjct 524 TTGCGG 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5