BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911943
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20990.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 1410 0.0
> AT1G20990.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr1:7330524-7331946 REVERSE LENGTH=960
Length=960
Score = 1410 bits (763), Expect = 0.0
Identities = 903/970 (93%), Gaps = 11/970 (1%)
Strand=Plus/Plus
Query 1 ATGATGAGAAGCAAATCCATAGTCATCAATTCCAACTCCAGGAACAATACTTCCACTGTC 60
|||||||||| |||||||||||||||||||||||| |||| |||| |||||||||| |
Sbjct 1 ATGATGAGAACCAAATCCATAGTCATCAATTCCAATTCCAAGAACGATACTTCCACCATT 60
Query 61 GCCGCAACGACAGCTCTAAGACGTTCGGCCTCAAACACTATCGCCGCAGCCCCGGTGGTA 120
|||||||||||||||| |||||||||||||||||||||| | || |||| | ||||||
Sbjct 61 TCCGCAACGACAGCTCTGAGACGTTCGGCCTCAAACACTACCCCCTCAGCTGCAGTGGTA 120
Query 121 CGCACAAATGATCTTAACAAAACACCCCGACCCCGGTCAGTAGAGTTCCCTGTATCTCCT 180
|||||||||||||||||||||| ||| ||||| ||||||||||||||||| | |||||||
Sbjct 121 CGCACAAATGATCTTAACAAAAAACCGCGACCTCGGTCAGTAGAGTTCCCGGCATCTCCT 180
Query 181 CAACTGA-TACAAGGTGAAGAGATGGTCCATTTCGGACATCCCCAACACGTGCTGGTCAA 239
||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 181 CAACT-AGTACAAGGTGAAGAGATGGTCCATTTCGGACATCCCCAACACGTGTTGGTTAA 239
Query 240 AGTTGAGTTGCCGGATATCTACACGTGTGCTGGGTGCAAAGAAGAAGGAGCAGGGGTTAG 299
|||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||
Sbjct 240 AGTTGAGTTGCCGGATATTTACACGTGCGCAGGGTGCAAAGAAGAGGGAGCAGGGGTTAG 299
Query 300 GTATGTGTGTCAAGAGTGTGATTATCAGCTCCACGAGTTTTGTGCTTTGGCTCCTCCTCA 359
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 GTACGTGTGTCAAGAATGTGATTATCAGCTCCATGAGTTTTGTGCTTTGGCTCCTCCTCA 359
Query 360 ACTCAAATCACACCCTTTTCATTACCAGCATCAACTTCTCTTCTTTGCCAAACCTGCGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACTCAAATCACACCCTTTTCATTACCAGCATCAACTTCTCTTCTTTGCCAAACCTGCGAA 419
Query 420 AGGAGGGATAGTAAAATCGAAATGTGACGTGTGTGGAAGATCACCAAAAGGTTACACTTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGAGGGATAGTAAAATCGAAATGTGACGTGTGTGGAAGATCACCAAAAGGTTACACTTT 479
Query 480 TAGATGCAAAGCTTGCAGTTTCCAAATGCATCCTGGCTGCGCCATGTTGCCGccttctct 539
||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 480 CAGATGCAAAGCTTGCAGTTTCCAAATGCATCCTGGCTGCGCCATGTTATCTCCTTCCCT 539
Query 540 ctcctcctcctccctccaccaccaccctctccgcctcctcccctcttcctcaccaGGTAA 599
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 CTCCTCTTCCTCCCTCCATCACCACCCTCTCCGCCTCCTCCCCTCTTCCTCAGCAGGTAG 599
Query 600 CATCACCGGGGGAGATTCCGGAGGATTCCTCTGCGGAGAGTGCAAGAGAGGTAAGCGAAC 659
|| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CACCACCGGCGGAGACTCCGGAGGATTCCTCTGCGGAGAGTGCAAGAGAGGTAAGCGAAC 659
Query 660 GGGGAGGGTTTACCGTTGCACCGTCTGCGATTATCACTTGCATGCCGTTTGTGCCAAAGA 719
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 660 GGGGAGGGTTTACCGTTGCACCGTCTGTGATTACCACTTGCATGCCGTTTGTGCCAAAGA 719
Query 720 CGCCGCCGTCAACGGCCTCCGAGCAAACGGACATAAGGGGAGGGATAAGTCTCCGGCGGT 779
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 720 CGCCGCCGTGAATGGCCTCCGAGCAAACGGACATAAAGGGAGGGATAAGTCTCCGGCAGT 779
Query 780 TTTGGGAACGGCGGCCAGGTTGGCGTCGCAGGTTGTTATTGATTTTCTCGGTGGTATAAT 839
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 780 TTTGGGAACGGCGGCAAGGTTGGCGTCGCAGGTTGTGATTGATTTTCTCGGTGGTATTAT 839
Query 840 CGATGGTCTCGGTGAAGGTGTTGGTGAAGCTATTATAGACGGTGTGACTAGAggtggtgg 899
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGATGGTCTTGGCGAAGGTGTTGGTGAAGCTATTATAGACGGTGTGACTAGAGGTGGTGG 899
Query 900 tggtggtggCGGCCGCGGAGGCGGAAATGGCGGTGTTACTAGGGTAATACCACGTGTCAG 959
|||||| ||| ||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 900 TGGTGG---CGG------AGGCGGAAATGGCGGTGGCACTAGAGTAATCCCACGTGTCAG 950
Query 960 AGGAGGGTAA 969
||||||||||
Sbjct 951 AGGAGGGTAA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5