BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911952
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21450.1 | Symbols: SCL1 | SCARECROW-like 1 | chr1:7508969-7... 891 0.0
AT1G21460.1 | Symbols: SWEET1, AtSWEET1 | Nodulin MtN3 family p... 231 1e-59
> AT1G21450.1 | Symbols: SCL1 | SCARECROW-like 1 | chr1:7508969-7511801
FORWARD LENGTH=2298
Length=2298
Score = 891 bits (482), Expect = 0.0
Identities = 560/597 (94%), Gaps = 7/597 (1%)
Strand=Plus/Plus
Query 1007 CAACTTGCAGAGCAGTGCCTTCAAAGACTTCAATTGTCTCTCCATCGACACTCGGTTGCA 1066
||| || || |||| |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1405 CAAATT-CAAAGCAATGCCTTCAAAGACTTCGATTGTCTCTCCATCAACACTCGGTTGCA 1463
Query 1067 AACCCGGAGAAACCTTAATTGTGAACTTTGCATTCCAGCTTCACCACATGCCAGACGAGA 1126
|||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 1464 AACCAGGAGAAACCTTAATAGTGAACTTTGCATTCCAACTTCACCACATGCCTGACGAGA 1523
Query 1127 GTGTCACAACAGTGAACCAGCGGGACGAGCTACTCCACATGGTCAAAAGCCTGAACCCAA 1186
||||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 1524 GTGTCACAACAGTAAACCAGCGGGACGAGCTACTTCACATGGTCAAAAGCTTAAACCCAA 1583
Query 1187 AGCTCGTCACAGTCGTTGAACAAGACGTGAACACAAACACTTCCCCGTTC-TTCTCCAGA 1245
|||| ||||| |||||||||||||||||||||||||||||||| |||||| ||| |||||
Sbjct 1584 AGCTTGTCACGGTCGTTGAACAAGACGTGAACACAAACACTTCACCGTTCTTTC-CCAGA 1642
Query 1246 TTCATAGAGGCTTACGAGTACTACTCAGCGGTTTTCGAGTCTCTAGACATGACACTTCCA 1305
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1643 TTCATAGAGGCTTACGAATACTACTCAGCAGTTTTCGAGTCTCTAGACATGACACTTCCA 1702
Query 1306 AGAGAAAGCCAAGAGAGGATGAATGTAGAAAGACAGTGTCTTGCTAGAGACATTGCCAAC 1365
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 1703 AGAGAAAGCCAAGAGAGGATGAATGTAGAAAGACAGTGTCTCGCTAGAGACATAGTCAAC 1762
Query 1366 ATCGTTGCTTGCGAAGGAGAAGAGCGGATAGAGAGATACGAGGCTGCCGGAAAATGGAGA 1425
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1763 ATTGTTGCTTGCGAAGGAGAAGAACGGATAGAGAGATACGAGGCTGCGGGAAAATGGAGA 1822
Query 1426 GCAAGGATGATGATGGCAGGATTCAATCCAAGACCAATGAGTGCTAAAGTAACCAACAAT 1485
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1823 GCAAGGATGATGATGGCTGGATTCAATCCAAAACCAATGAGTGCTAAAGTAACCAACAAT 1882
Query 1486 ATACAGAACCTCATAAAGCAACAGTATTGCAATAGGTACAAGCTTAAAGAAGAAATGGGT 1545
||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1883 ATACAAAACCTGATAAAGCAACAATATTGCAATAAGTACAAGCTTAAAGAAGAAATGGGT 1942
Query 1546 GAGCTCCATTTTTGCTGGGAGGAGAAAAGCTTAATCGTTCGTTGCTTCAGCTTGGAG 1602
||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1943 GAGCTCCATTTTTGCTGGGAGGAGAAAAGCTTAATCGTT-G---CTTCAGCTTGGAG 1995
Score = 841 bits (455), Expect = 0.0
Identities = 512/540 (95%), Gaps = 1/540 (0%)
Strand=Plus/Plus
Query 361 GAGTTTGATGATGAGCAAATGAGATCAAAGATTCAAGAGCTTGAAAGAGCTCTTCTCGGC 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 659 GAGTTTGATGATGAGCAAATGAGATCAAAGATTCAAGAGCTTGAAAGAGCGCTTCTCGGC 718
Query 421 GATGAAGATGAGAAAATGGTTGGAATAGATAATCTGATGGAGATTGACAACGAATGGTCG 480
||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 719 GATGAAGATGATAAAATGGTTGGAATAGATAACCTCATGGAGATTGACAGCGAATGGTCG 778
Query 481 TACCAAAACGAAAGTGAACAGCATCAGGACTCGCCCAAAGAATCATCATCTGCAGATTCC 540
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 779 TACCAAAACGAAAGCGAACAGCATCAAGACTCGCCCAAAGAATCATCGTCTGCAGATTCC 838
Query 541 AACTCTCATGTAAGTAGCAAAGAAGTGGTGTCGCAAGGCACTCCAAAGCAAATCTTGATA 600
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 839 AACTCTCATGTAAGTAGCAAAGAAGTGGTGTCTCAAGCCACTCCAAAGCAAATCTTGATA 898
Query 601 TCTTGTGCTCGTGCGTTATCCGAAGGGAAAGCAGAATTAGCTTTGTCAATGGTAAATGAG 660
||||||||||||||| |||| ||||| ||| |||| ||||||||||||||||||||||
Sbjct 899 TCTTGTGCTCGTGCGCTATCTGAAGGAAAATTAGAAGAAGCTTTGTCAATGGTAAATGAG 958
Query 661 CTGAGGCAGATTGTTTCGATCCAAGGAGATCCTTCTCAGAGAATCGCAGCTTACATGGTG 720
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 959 CTGAGGCAGATAGTTTCTATCCAAGGAGACCCTTCTCAGAGAATCGCAGCTTACATGGTG 1018
Query 721 GAAGGTCTAGCTGCAAGAATGGCTGCTTCAGGGAAATTCCTCTACAGAGCATTGAAATGC 780
||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 1019 GAAGGTCTAGCTGCAAGAATGGCCGCTTCAGGAAAATTCATCTACAGAGCATTGAAATGC 1078
Query 781 AAAGAGCCTCCTTCTGATGAGAGGCTTGCAGCTATGCAAGTCCTCTTTGAAGTCTGCCCT 840
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1079 AAAGAGCCTCCTTCGGATGAGAGGCTTGCAGCTATGCAAGTCCTGTTTGAAGTCTGCCCT 1138
Query 841 TGTTTCAAATTCGGGTTTTTAGCAGCTAATGGTGCGATAATTGAAGCAATCAAAGG-GAA 899
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1139 TGTTTCAAGTTCGGGTTTTTAGCAGCTAATGGTGCGATACTTGAAGCAATCAAAGGTGAA 1198
Score = 494 bits (267), Expect = 2e-138
Identities = 330/359 (92%), Gaps = 9/359 (3%)
Strand=Plus/Plus
Query 1 ATGGTGGAACAGACTGTGGTTAGAGAACATATTAAAGCGAGAGTCATGTCATTAGTGAGG 60
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 218 ATGGTGGAACAAACTGTGGTTAGAGAACATATCAAAGCGAGAGTCATGTCATTAGTGAGG 277
Query 61 CCAGCTGAGCCATCCGCTACATCGTATAGGAACCCGAAGCTTTACTCGTTGAATGATAAT 120
| || ||||||| | || || ||||||||||||||||||||| |||||||||| |||
Sbjct 278 TCTGCAGAGCCAT-C-CT-CA---TATAGGAACCCGAAGCTTTACACGTTGAATGAGAAT 331
Query 121 GGTAACAACAATGGTGTCACTTCTGCTCAAATCTTTGATCCAGACAGGTCCAAGAA-CAC 179
||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||| | |
Sbjct 332 GGTAATAACAATGGTGTCAGTTCTGCTCAAATCTTTGATCCAGATAGGTCAAAGAATC-C 390
Query 180 TTGTCTGACTGATGATTCTTACCCAAGCCAAAGTTATGAGAAGTACTTTCTCGATTCGCC 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 391 TTGTCTGACTGATGATTCTTACCCAAGCCAAAGTTATGAGAAGTACTTTCTTGATTCGCC 450
Query 240 ACCAGATGAGTTTGTACAACATCCTATTGGCTCTGGTGCCTCGGTTCAGCTCATTTGGCT 299
| | ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 451 AACTGATGAGTTTGTTCAACATCCTATTGGCTCTGGTGCCTCGGTT-AGCTCATTTGGCT 509
Query 300 CTTTGGACTCGTTTCCGTATCAGCCAAGACCGGTTCTTGGATGTTCCATGGAATTTCAG 358
|||| ||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 510 CTTTAGACTCATTTCCTTATCAGTCAAGACCAGTTCTTGGATGTTCCATGGAATTTCAG 568
Score = 86.1 bits (46), Expect = 1e-15
Identities = 61/68 (90%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 893 AAGGGAACCAATACATGACACTGATACGGTA-CGTTGCTGAGTTACCCGGTAAACGTCCT 951
|||||||||||||||||||||||||||| | | |||||||||| || |||||||| |||
Sbjct 1233 AAGGGAACCAATACATGACACTGATACGA-AGCATTGCTGAGTTGCCTGGTAAACGACCT 1291
Query 952 CGCCTGAG 959
||||||||
Sbjct 1292 CGCCTGAG 1299
> AT1G21460.1 | Symbols: SWEET1, AtSWEET1 | Nodulin MtN3 family
protein | chr1:7511850-7513361 REVERSE LENGTH=1004
Length=1004
Score = 231 bits (125), Expect = 1e-59
Identities = 159/176 (90%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 1598 TGGAGAGTGGAGAAGCGTACATGATGATGGAGAAAACAGTGGCTGCGATACCACAGAAGA 1657
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct 522 TGGAGAGTGGAGAAGCGTACATGATGATGGAGAAAACAGTAGCTGCGAGACCACAAAAGA 463
Query 1658 GTTTTCTTGAGTTTCCATGGAGGGCagagagagagacgagagCTACTGTTGCGAATACGG 1717
||||||| |||||| || || ||| ||||||||||||||||||||||||||||||| |
Sbjct 462 GTTTTCTACCGTTTCCTTGAAGAGCAAAGAGAGAGACGAGAGCTACTGTTGCGAATACAG 403
Query 1718 TCAAGACGCAAGTGAAGATACCAAAGATCTTTGCTTTCTCCTTCTTTGGTGCGTAG 1773
||| ||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 402 CCAAAACGCAAGAGAAGATACCAAAGATCTTAATTTTCTCCTTCTTTGGTGCGTAG 347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87700352115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5