BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911973
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21360.1 | Symbols: GLTP2 | glycolipid transfer protein 2 | ... 1066 0.0
> AT1G21360.1 | Symbols: GLTP2 | glycolipid transfer protein 2
| chr1:7481252-7483507 FORWARD LENGTH=1055
Length=1055
Score = 1066 bits (577), Expect = 0.0
Identities = 641/672 (95%), Gaps = 3/672 (0%)
Strand=Plus/Plus
Query 1 ATgaagagaaagagatacgagat-g-g-agaagaagaagacagagCTTCAAACCGCTATT 57
||||||||||||||||||||||| | | ||||||||||||||||| |||||||||| |||
Sbjct 114 ATGAAGAGAAAGAGATACGAGATGGAGAAGAAGAAGAAGACAGAGATTCAAACCGCCATT 173
Query 58 GAAGAGCTCTCTCTTTTCATCGTAACTAAACCTGCAGATAACACTCAAGCTACACATATA 117
|||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 174 GAAGAGCTCTCTGTTTTCATCGTAACTAAACCTGCAGATAAGACTGAGGCTACACATATA 233
Query 118 CCCTTGAGGCCTCTTCTCTCCTTCTGCAACTTAATCATCCAAGTTCTTGATAAGATAGGA 177
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 234 CCCTTGAGGCCTATTCTCTCCTTCTGCAGCTTAATCATCCAAGTTCTTGATAAGATAGGA 293
Query 178 CCGACAATGGCTGTTCTTAGACAAGACATTGATCAAAATATTCAGAGATTAGAGAAAGTT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 294 CCGACAATGGCTGTTCTTAGACAAGACATTGATCAAAATATTCAGAGATTAGAGAAATTT 353
Query 238 TGTGAAACAGATTCGTGTGTTTACTCCAATTTGGTTGAGATTCTGAAGAAAGAAAAGGAG 297
| |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 354 TATGAAACAGATTCCTGTGTTTACTCGAATTTGGCTGAGATTCTGAAGAAAGAAAAGGAG 413
Query 298 GAAGGAACATCCAAGATGGTTGCTAGTTGCAGTAGAGCTCTATTTTGGCTCACTAGGACA 357
|| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 414 GAGGGAACATCCAAGATGGTTGCTAGTTGTGGTAGAGCTCTTTTTTGGCTCACTAGGACA 473
Query 358 ATGGATTTTACTTCTGGTTTACTACGATTGTTGTCGAAAGAGATGTCGTCGAAAATGGAA 417
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ATGGATTTTACTGCGGGTTTACTACGATTGTTGTCGAAAGAGATGTCGTCGAAAATGGAA 533
Query 418 GAACTTGTAGAAGAATGCTACATGACGACTTTAAAACCGCATCATGGATGGATCGCGTCT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GAACTTGTAGAAGAATGCTACATGACGACTTTAAAACCGCATCATGGATGGATCGCGTCT 593
Query 478 GCTGCTTTCAAAGTTTGTCTGAGGCTAGTGCCTGACAACAAGACGTTCATGGACGCGATC 537
|||||||||||||| ||| ||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 594 GCTGCTTTCAAAGTGTGTTTGAAGCTGGTGCCTGACAACAAGACGTTCATGGAAGCGATC 653
Query 538 GGTGCAAGAGACGAGAGTTATGATACCTTAAGAGAAGACATCGATACCTTAAGCTCATTG 597
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 654 GGTGCAAGAGACGAGAGCTATGATACCTTAAGAGAAGACATTGATACCTTGAGCTCATTG 713
Query 598 TTGACACCTATTCTCAAAGAAATCTACTTTGTTCTGGAGCAATACGGGTTGAGCAGATTA 657
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 714 TTGACACCTATTCTCAAAGAAATCTACTTTGTTCTGGAACAATACGGGTTGAGCAGATTA 773
Query 658 AGATCGATGTAG 669
||||||||||||
Sbjct 774 AGATCGATGTAG 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5