BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912012
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21720.1 | Symbols: PBC1 | proteasome beta subunit C1 | chr1... 1033 0.0
AT1G77440.1 | Symbols: PBC2 | 20S proteasome beta subunit C2 | ... 678 0.0
> AT1G21720.1 | Symbols: PBC1 | proteasome beta subunit C1 | chr1:7626283-7628262
FORWARD LENGTH=918
Length=918
Score = 1033 bits (559), Expect = 0.0
Identities = 593/610 (97%), Gaps = 0/610 (0%)
Strand=Plus/Plus
Query 6 GATCTTCGAGTACAATGGAAGTGCCGTTGTTGCTATGGTAGGTAAGAACTGTTTCGCCAT 65
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 117 GATCTTCGAGTACAATGGAAGTGCTGTTGTTGCTATGGTAGGTAAGAATTGTTTCGCCAT 176
Query 66 CGCCAGTGATCGGAGACTCGGTGTTCAGCTACAGACTATCGCCACTGATTTCCAGAGAAT 125
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 177 CGCCAGTGATCGGAGACTCGGTGTTCAGCTACAGACAATCGCCACTGATTTCCAGAGAAT 236
Query 126 CTCCAAGATCCACGATCGTGTCTTCATCGGTCTTTCTGGTCTCGCTACCGATGTTCAAAC 185
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 237 CTCCAAGATCCACGATCGTGTCTTCATCGGTCTTTCTGGTCTCGCCACCGATGTTCAAAC 296
Query 186 ACTGTACCAGCGCTTGGTGTTTCGTCATAAGCTTTACCAGCTTCGTGAAGAGAGAGACAT 245
||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 297 ACTATACCAGCGCTTGGTGTTTCGTCATAAGCTTTACCAGCTTAGGGAAGAGAGAGACAT 356
Query 246 GAAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCTATTCTTTACGAGAAGAGATTTGGTCC 305
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 357 GAAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATCCTTTACGAGAAGAGATTTGGTCC 416
Query 306 TTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGACAAGCCTTTCATTTGCAC 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGACAAGCCTTTCATTTGCAC 476
Query 366 GATGGACTCTATTGGAGCCAAAGAGTTGGCTAAAGATTTTGTTGTATCTGGAACTGCTTC 425
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 477 GATGGACTCTATCGGAGCCAAAGAGTTAGCTAAAGATTTTGTTGTATCTGGAACTGCTTC 536
Query 426 AGAATCACTCTATGGAGCCTGTGAGGCAATGTACAAGCCAGATATGGAAGCTGAGGAATT 485
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGAATCACTCTATGGAGCTTGTGAGGCAATGTACAAGCCAGATATGGAAGCTGAGGAATT 596
Query 486 GTTCGAGACAATATCGCAAGCACTTCTCTCGTCGGTTGACCGTGATTGTCTGAGTGGTTG 545
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 597 GTTCGAGACAATATCGCAAGCACTTCTCTCATCTGTTGACCGTGATTGTCTGAGTGGTTG 656
Query 546 GGGAGGACACGTCTACATTGTAACACCAACAGAGATTAAGGAGAGGATCCTAAAGGGAAG 605
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGGAGGGCATGTTTACATTGTAACACCAACAGAGATTAAGGAGAGGATCCTAAAGGGAAG 716
Query 606 GATGGATTGA 615
||||||||||
Sbjct 717 GATGGATTGA 726
> AT1G77440.1 | Symbols: PBC2 | 20S proteasome beta subunit C2
| chr1:29096235-29098393 FORWARD LENGTH=1002
Length=1002
Score = 678 bits (367), Expect = 0.0
Identities = 533/614 (87%), Gaps = 8/614 (1%)
Strand=Plus/Plus
Query 6 GATCTTCGAGTACAATGGAAGTGCCGTTGTTGCTATGGTAGGTAAGAACTGTTTCGCCAT 65
||||||||||||||||||||||||||| || ||||||||||| ||||| || ||||| ||
Sbjct 105 GATCTTCGAGTACAATGGAAGTGCCGTCGTAGCTATGGTAGGGAAGAATTGCTTCGCTAT 164
Query 66 CGCCAGTGATCGGAGACTCGGTGTTCAGCTACAGACTATCGCCACTGATTTCCAGAGAAT 125
|| ||||||||||| || ||||| || |||| || || || || ||||| ||||||||
Sbjct 165 AGCTAGTGATCGGAGGCTTGGTGTGCAATTACAAACCATTGCTACCGATTTTCAGAGAAT 224
Query 126 CTCCAAGATCCACGATCGTGTCTTCATCGGTCTTTCTGGTCTCGCTACCGATGTTCAAAC 185
|| ||||||||||||| | |||||||||| ||||| |||||||| |||||||| || ||
Sbjct 225 ATCTAAGATCCACGATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGAC 284
Query 186 ACTGTACCAGCG-CTTGGTGTTTCGTCATAAGCTT-TACCAGCTTCGTGAAGAGAGAGAC 243
| |||||||||| | | || |||||||||||| || || |||||| | ||||| ||||||
Sbjct 285 ATTGTACCAGCGAC-TCGTATTTCGTCATAAG-TTATATCAGCTTAGGGAAGAAAGAGAC 342
Query 244 ATGAAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCTATTCTTTACGAGAAGAGATTTGGT 303
||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct 343 ATGAAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTATGAGAAAAGATTTGGC 402
Query 304 CC-TTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGACAAGCCTTTCATTTG 362
|| || ||| |||||||||||||||||||| |||||||||||| |||| || ||||||||
Sbjct 403 CCATT-CTTGTGCCAACCTGTGATTGCTGGATTGGGAGATGATAACAAACCCTTCATTTG 461
Query 363 CACGATGGACTCTATTGGAGCCAAAGAGTTGGCTAAAGATTTTGTTGTATCTGGAACTGC 422
||| ||||| |||||||||||||| ||||| ||||||||||||||||| || ||||||||
Sbjct 462 CACTATGGATTCTATTGGAGCCAAGGAGTTAGCTAAAGATTTTGTTGTCTCGGGAACTGC 521
Query 423 TTCAGAATCACTCTATGGAGCCTGTGAGGCAATGTACAAGCCAGATATGGAAGCTGAGGA 482
||||||||| || ||||| |||||||| || |||| ||| ||||||||||||||||||||
Sbjct 522 TTCAGAATCTCTATATGGTGCCTGTGAAGCCATGTTCAAACCAGATATGGAAGCTGAGGA 581
Query 483 ATTGTTCGAGACAATATCGCAAGCACTTCTCTCGTCGGTTGACCGTGATTGTCTGAGTGG 542
| | ||||||||||| || |||||||||||||| || |||||||| |||||||| |||||
Sbjct 582 ACTATTCGAGACAATTTCACAAGCACTTCTCTCTTCAGTTGACCGCGATTGTCTTAGTGG 641
Query 543 TTGGGGAGGACACGTCTACATTGTAACACCAACAG-AGATTAAGGAGAGGATCCTAAAGG 601
||||||||||| |||||| |||||||||||| || || | |||||||| ||||| ||||
Sbjct 642 GTGGGGAGGACATGTCTACGTTGTAACACCAA-AGGAGGTGAAGGAGAGAATCCTGAAGG 700
Query 602 GAAGGATGGATTGA 615
||||||||||||||
Sbjct 701 GAAGGATGGATTGA 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5