BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912015
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53810.1 | Symbols: | Concanavalin A-like lectin protein ki... 854 0.0
> AT3G53810.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr3:19932992-19935234 REVERSE LENGTH=2243
Length=2243
Score = 854 bits (462), Expect = 0.0
Identities = 506/528 (96%), Gaps = 0/528 (0%)
Strand=Plus/Plus
Query 264 TCGCAAACGGATTCAGGTTTGGATCGATTACGATAATCGGAGTCATCGAATCGATGTCAC 323
|||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 621 TCGCAAACGGATCCAAGTTTGGATCGATTACGATAATCGTAGTCATCGAATTGATGTCAC 680
Query 324 CATGGCTCCGTTTGATTCCGATAAACCTAGAAAACCTCTAGTTTCGTATGTGAGAGATCT 383
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 681 CGTGGCTCCGTTTGATTCTGATAAACCTAGAAAACCTCTAGTTTCGTATGTGAGAGATCT 740
Query 384 TTCTTCGATTCTTCTGGAAGATATGTATGTAGGTTTCTCATCTGCTACTGGTTCAGTTCT 443
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 741 TTCTTCGATTCTTCTAGAAGATATGTATGTAGGTTTCTCATCTGCGACTGGTTCAGTTCT 800
Query 444 CTCGGAGCATTTCGTAGTCGGATGGAGTTTCCGGTTAAACGGAGAAGCTCCGATGCTTTT 503
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 801 CTCGGAGCATTTCTTAGTCGGATGGAGTTTCCGGTTAAACGGAGAAGCTCCGATGCTCTC 860
Query 504 GTTATCGAAACTCCCGAAGCTTCCTCGATTCGAGCCGAGACGAATCTCTGAATTCTACAA 563
|||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 861 GTTATCGAAACTCCCGAAGCTTCCTCGATTTGAGCCTAGAAGAATCTCTGAATTCTACAA 920
Query 564 AATCGGTATGCCTTTGATTTCACTATCTCTGATCTTCTCTATTATCTTCCTCGCTTTCTA 623
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 921 AATCGGTATGCCTTTGATTTCACTATCTCTGATCTTCTCTATCATCTTCCTCGCTTTCTA 980
Query 624 TATCGTGAGGAGGAAGAAGAAGTACGAGGAAGAGCTTGATGATTGGGAAACAGAGTTTGG 683
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CATCGTGAGGAGGAAGAAGAAGTACGAGGAAGAGCTTGATGATTGGGAAACAGAGTTTGG 1040
Query 684 GAAGAATCGATTTAGATTCAAGGAGCTTTATCATGCGACCAAAGGTTTTAAGGAGAAGGA 743
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1041 GAAGAATCGATTCAGATTCAAGGAGCTCTATCACGCGACCAAAGGTTTTAAGGAGAAGGA 1100
Query 744 TCTTCTCGGATCTGGTGGATTTGGGAGAGTTTACAGAGGGATTTTACC 791
||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 1101 TCTTCTCGGCTCCGGTGGATTTGGGAGAGTTTACAGAGGCATTTTACC 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5