BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912019

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21770.1 | Symbols:  | Acyl-CoA N-acyltransferases (NAT) sup...   532    6e-151
  AT1G21780.1 | Symbols:  | BTB/POZ domain-containing protein | c...   353    5e-97 


> AT1G21770.1 | Symbols:  | Acyl-CoA N-acyltransferases (NAT) superfamily 
protein | chr1:7651646-7652288 REVERSE LENGTH=572
Length=572

 Score =  532 bits (288),  Expect = 6e-151
 Identities = 320/336 (95%), Gaps = 0/336 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGACGAGGCCGGCGATGGAGAAACCGAAGATCGTGTGGAACGAAGGAAGACATAGA  60
            ||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  40   ATGGCGACGGGGACGGCGACGGAGAAACCGAAGATCGTGTGGAACGAAGGAAGACATAGA  99

Query  61   TTCGAGACTGAGGATCACGAAGCCTTCATAGAATACAAGATGACGAACGACGGTAAAGTC  120
            ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct  100  TTCGAGACTGATGATCACGAAGCCTTCATAGAGTACAAGATGAAGAATGACGGTAAAGTC  159

Query  121  ATGGATCTGGTTCGAACCTTCGTACCGCCGTCAAAAGCAGGACTTGGTTTAGCTTCGCAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  160  ATGGATCTGGTTCGAACCTTCGTACCGCCGTCAAAAGCAGGACTTGGTTTAGCTTCGCAT  219

Query  181  CTCTGCGTCGCCGCCTTCGAACACGCCTCCGAACACTCTTTCTCCATCATCCCCACTTGC  240
            || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  220  CTATGCGTCGCCGCTTTCGAACACGCCTCTGAACACTCTTTCTCCATCATCCCCACTTGC  279

Query  241  TCCTACGTTTCCGAAACGTTTATTCCTCGATACCCATCGTGGGAGCATCTGGTTCACTCA  300
            ||||||||||||||||||||| ||| |||| ||||| ||||| ||| |||||||||||||
Sbjct  280  TCCTACGTTTCCGAAACGTTTCTTCATCGAAACCCAACGTGGCAGCGTCTGGTTCACTCA  339

Query  301  GAGGATGATTCCAAGAACCTCAAGTCTAGCATCTGA  336
            ||||||||||||||||||||||||||||||||||||
Sbjct  340  GAGGATGATTCCAAGAACCTCAAGTCTAGCATCTGA  375


> AT1G21780.1 | Symbols:  | BTB/POZ domain-containing protein | 
chr1:7652029-7654014 FORWARD LENGTH=1478
Length=1478

 Score =  353 bits (191),  Expect = 5e-97
 Identities = 211/221 (95%), Gaps = 0/221 (0%)
 Strand=Plus/Minus

Query  1    ATGGCGACGAGGCCGGCGATGGAGAAACCGAAGATCGTGTGGAACGAAGGAAGACATAGA  60
            ||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  221  ATGGCGACGGGGACGGCGACGGAGAAACCGAAGATCGTGTGGAACGAAGGAAGACATAGA  162

Query  61   TTCGAGACTGAGGATCACGAAGCCTTCATAGAATACAAGATGACGAACGACGGTAAAGTC  120
            ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct  161  TTCGAGACTGATGATCACGAAGCCTTCATAGAGTACAAGATGAAGAATGACGGTAAAGTC  102

Query  121  ATGGATCTGGTTCGAACCTTCGTACCGCCGTCAAAAGCAGGACTTGGTTTAGCTTCGCAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  101  ATGGATCTGGTTCGAACCTTCGTACCGCCGTCAAAAGCAGGACTTGGTTTAGCTTCGCAT  42

Query  181  CTCTGCGTCGCCGCCTTCGAACACGCCTCCGAACACTCTTT  221
            || ||||||||||| |||||||||||||| |||||||||||
Sbjct  41   CTATGCGTCGCCGCTTTCGAACACGCCTCTGAACACTCTTT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5