BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912042

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21930.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   473    3e-133
  AT3G42150.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   435    1e-121


> AT1G21930.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G42150.3); 
Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7712898-7714443 
FORWARD LENGTH=532
Length=532

 Score =  473 bits (256),  Expect = 3e-133
 Identities = 284/297 (96%), Gaps = 3/297 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAGTCAGGAGAATGTGAAACACCTCGAGGAATGCACTGTTTCCAATGCATTAGGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  91   ATGGGAAGTCAGGAGAATGTGAAACACCTCGAGGAATGCACTGTTTCCAATGCATTAGGG  150

Query  61   ACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATCAAACGCAAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  151  ACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATCAAACGCAAG  210

Query  121  TCTCTAGGTCCACTAGTGTTCTTTGGCACAACGGGAACAATGCTCGACATCATCATTGGT  180
            ||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  211  TCTCTTGGGCCACTCGTGTTCTTTGGCACAACCGGAACAATGCTCGACATCATCATTGGT  270

Query  181  GTAAGTCAATGTGAGAGAGAACACGCAGAGCACCAAATGAAGTTACTCCAAGACTCTCAA  240
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  271  GTAAGTCAATGCGAGAGAGAACACGCAGAACACCAAATGAAGTTACTCCAAGACTCTCAA  330

Query  241  AATGCCACAACAACAACCA--A-CACAGAGACTGAGGATAGCTCTTCCATGACCTAA  294
            |||||||||||||||||||  | |||||||||||| || |||||||||||| |||||
Sbjct  331  AATGCCACAACAACAACCACCAACACAGAGACTGAAGAAAGCTCTTCCATGTCCTAA  387


> AT3G42150.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, 
pollen tube; EXPRESSED DURING: L mature pollen stage, 
M germinated pollen stage; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT1G21930.1); Has 35333 
Blast hits to 34131 proteins in 2444 species: Archae - 798; 
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; 
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 
| chr3:14310047-14311586 FORWARD LENGTH=470
Length=470

 Score =  435 bits (235),  Expect = 1e-121
 Identities = 282/303 (93%), Gaps = 9/303 (3%)
 Strand=Plus/Plus

Query  1    ATGGGAAGTCAGGAGAATGTGAAACACCTCGAGGAATGCACTGTTTCCAATGCATTAGGA  60
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  47   ATGGGAAGTCAGAAGAATGTGAAACACCTCGAGGAATGCACTGTTTCCAATGCATTGGGA  106

Query  61   ACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATCAAACGCAAG  120
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  107  ACTTGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATCAAACGCAAG  166

Query  121  TCTCTAGGTCCACTAGTGTTCTTTGGCACAACGGGAACAATGCTCGACATCATCATTGGT  180
            |||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct  167  TCTCTAGGTCCACTTGTGTTCTTCGGCACAACCGGAACAATGCTCGACATTATCATTGGT  226

Query  181  GTAAGTCAATGTGAGAGAGAACACGCAGAGCACCAAATGAAGTTACTCCAAGACTCTCAA  240
            || |||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct  227  GTGAGTCAATGCGAGAGAGAACACGCAGAACACCAAACGAAGTTACTCCAAGACTCTCAA  286

Query  241  AATGCCACAACAACAAC--CAAC-AC-A-----GAGACTGAGGATAGCTCTTCCATGACC  291
            |||||||||||||||||  |||| || |     |||||||||||||||||||||||| ||
Sbjct  287  AATGCCACAACAACAACAACAACCACCAACACAGAGACTGAGGATAGCTCTTCCATGTCC  346

Query  292  TAA  294
            |||
Sbjct  347  TAA  349



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13572292230


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5