BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg912042 Length=294 Score E Sequences producing significant alignments: (Bits) Value AT1G21930.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 473 3e-133 AT3G42150.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 435 1e-121 > AT1G21930.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7712898-7714443 FORWARD LENGTH=532 Length=532 Score = 473 bits (256), Expect = 3e-133 Identities = 284/297 (96%), Gaps = 3/297 (1%) Strand=Plus/Plus Query 1 ATGGGAAGTCAGGAGAATGTGAAACACCTCGAGGAATGCACTGTTTCCAATGCATTAGGA 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 91 ATGGGAAGTCAGGAGAATGTGAAACACCTCGAGGAATGCACTGTTTCCAATGCATTAGGG 150 Query 61 ACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATCAAACGCAAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 151 ACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATCAAACGCAAG 210 Query 121 TCTCTAGGTCCACTAGTGTTCTTTGGCACAACGGGAACAATGCTCGACATCATCATTGGT 180 ||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 211 TCTCTTGGGCCACTCGTGTTCTTTGGCACAACCGGAACAATGCTCGACATCATCATTGGT 270 Query 181 GTAAGTCAATGTGAGAGAGAACACGCAGAGCACCAAATGAAGTTACTCCAAGACTCTCAA 240 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 271 GTAAGTCAATGCGAGAGAGAACACGCAGAACACCAAATGAAGTTACTCCAAGACTCTCAA 330 Query 241 AATGCCACAACAACAACCA--A-CACAGAGACTGAGGATAGCTCTTCCATGACCTAA 294 ||||||||||||||||||| | |||||||||||| || |||||||||||| ||||| Sbjct 331 AATGCCACAACAACAACCACCAACACAGAGACTGAAGAAAGCTCTTCCATGTCCTAA 387 > AT3G42150.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:14310047-14311586 FORWARD LENGTH=470 Length=470 Score = 435 bits (235), Expect = 1e-121 Identities = 282/303 (93%), Gaps = 9/303 (3%) Strand=Plus/Plus Query 1 ATGGGAAGTCAGGAGAATGTGAAACACCTCGAGGAATGCACTGTTTCCAATGCATTAGGA 60 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 47 ATGGGAAGTCAGAAGAATGTGAAACACCTCGAGGAATGCACTGTTTCCAATGCATTGGGA 106 Query 61 ACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATCAAACGCAAG 120 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 107 ACTTGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATCAAACGCAAG 166 Query 121 TCTCTAGGTCCACTAGTGTTCTTTGGCACAACGGGAACAATGCTCGACATCATCATTGGT 180 |||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 167 TCTCTAGGTCCACTTGTGTTCTTCGGCACAACCGGAACAATGCTCGACATTATCATTGGT 226 Query 181 GTAAGTCAATGTGAGAGAGAACACGCAGAGCACCAAATGAAGTTACTCCAAGACTCTCAA 240 || |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 227 GTGAGTCAATGCGAGAGAGAACACGCAGAACACCAAACGAAGTTACTCCAAGACTCTCAA 286 Query 241 AATGCCACAACAACAAC--CAAC-AC-A-----GAGACTGAGGATAGCTCTTCCATGACC 291 ||||||||||||||||| |||| || | |||||||||||||||||||||||| || Sbjct 287 AATGCCACAACAACAACAACAACCACCAACACAGAGACTGAGGATAGCTCTTCCATGTCC 346 Query 292 TAA 294 ||| Sbjct 347 TAA 349 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13572292230 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5