BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912043
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21940.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 760 0.0
> AT1G21940.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G21950.1); Has
19 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7715170-7716975
REVERSE LENGTH=552
Length=552
Score = 760 bits (411), Expect = 0.0
Identities = 508/555 (92%), Gaps = 6/555 (1%)
Strand=Plus/Plus
Query 1 ATGACCGGAGACGTGGCGTATTCTTGGGTGATGGAGTTCAATTTGTGGGCGCATCTGGCT 60
||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 1 ATGACCGGACACGTGGCGTATTCTTGGGCGATGGAGTTCAACTTGTGGGCGCATCTTGCT 60
Query 61 TTTAGGCTTGTGATTTTC-AGAACCATTTTTGCTCCGATGGTGGTGAAACTGGAACGGAT 119
|||| |||||||||| || || | |||| ||||||||||||||||| ||||||||| |||
Sbjct 61 TTTATGCTTGTGATTCTCAAG-ATCATTGTTGCTCCGATGGTGGTGGAACTGGAACAGAT 119
Query 120 GAGAAACGTACGAGAAGAGTGCGACGTGCAGCTACTCGTGGA-TTCAGAGATATCAATGG 178
|||||| |||||||||||||| ||||||||||| |||||||| | | ||||| ||||||
Sbjct 120 GAGAAAAGTACGAGAAGAGTGTGACGTGCAGCTGCTCGTGGACTAC-GAGATCGCAATGG 178
Query 179 ATGATGATGATGGAGGTCGTGAGAGAAGAGAAGAGACTCGTCGAGTAAACGATCGTTTCT 238
|||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 179 ATGACGAAGATGGAGGTCGTGAGAGAAGAGAAGAAACTCGTCGTGTAAACGATCGTTTCT 238
Query 239 TTCTTGCAGTTTCCCTCGCCATTTTCACCGGAATCTGCAAACGATCAGCTGGTTTTGACG 298
||||||||||||| |||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 239 TTCTTGCAGTTTCGCTCGCCATTTTCACCGGAATCTGCAAACGAGCTTCTGGTTTCGACG 298
Query 299 GTTCATATCTAACGGAGACGACGAAGAACGGACACGTGGCGTTCTACTGCGCATCAGAGC 358
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 299 GTTCATATCTAACGGAGACGACGAAGAACGGACACGTGGCGTTATACTGTGCATCAGAGC 358
Query 359 TCAATAAGATGGCCGATATGTGTTTTACGGTGGTGATTATCAGAATCGGTTTATCGATGC 418
| || ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 359 TGAACAAGATGGCCGATATGTGCTTTATGGTGGTGATTATCAGAATCGGTTTATCGATGC 418
Query 419 TTGGACTCACTTTTGCGCCGGTGGTGATGCGAAGACTACGAGAAGAGTCGGACATGAAAC 478
|||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 419 TTGGACTCACGTTTGCGCCGGTGGTGATGCGTAGACTACGAGAAGAGACGGACATGAAAC 478
Query 479 TGACGATGGGTTTTATCTGCCTA-CTGATTTCACTCTGCTTCTCCGCTTATCTCCGGTTG 537
| ||| |||||| |||||||||| | |||||| |||||||||||||||||||| |||||
Sbjct 479 TTACGTTGGGTTCTATCTGCCTAGC-GATTTCGCTCTGCTTCTCCGCTTATCTTCGGTTC 537
Query 538 TTCGTCGTCCGATGA 552
||||||||| |||||
Sbjct 538 TTCGTCGTCGGATGA 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26473395469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5