BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912046

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24775.1 | Symbols:  | transposable element gene | chr5:8503...   278    2e-74
  AT4G03740.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   159    9e-39


> AT5G24775.1 | Symbols:  | transposable element gene | chr5:8503317-8506432 
FORWARD LENGTH=3116
Length=3116

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 198/222 (89%), Gaps = 0/222 (0%)
 Strand=Plus/Plus

Query  1     ACGGAGAAAAACGGAGGTGTGGAACCTGATTTTGTAGAAGTCATTGAGGATACACACACC  60
             |||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct  2619  ACGGAGAAGAACGGAGGTGTGAAACCTGATTTTGTAGAAATCATTGAGGATACACACACC  2678

Query  61    AACAAGAAAACAGGAAAAATTCAAGATGGTTACATCGCAGGCCTCGTTGAGACGTTGAAG  120
             ||||||||||| |||  ||||||||| ||||||||||| || || |||||||| ||||||
Sbjct  2679  AACAAGAAAACTGGATTAATTCAAGACGGTTACATCGCGGGTCTTGTTGAGACATTGAAG  2738

Query  121   AAAAGGAAGACGGAGTGCCTCACGCAGCTTTCTCAAAATGATGATGGTTCCTCATCATCC  180
             | ||||||||||||||||||||| |||||| | |||||||||||||| |||||| |||||
Sbjct  2739  AGAAGGAAGACGGAGTGCCTCACACAGCTTCCCCAAAATGATGATGGATCCTCACCATCC  2798

Query  181   AATGTCTTTGTCCGAGAAAAGATCAACCGCATGGTTCTTGAG  222
             || |||   | ||||||||| || ||||||||||||||||||
Sbjct  2799  AACGTCCAGGCCCGAGAAAAAATTAACCGCATGGTTCTTGAG  2840


> AT4G03740.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr4:1661992-1663515 
REVERSE LENGTH=1038
Length=1038

 Score =  159 bits (86),  Expect = 9e-39
 Identities = 102/110 (93%), Gaps = 0/110 (0%)
 Strand=Plus/Plus

Query  4    GAGAAAAACGGAGGTGTGGAACCTGATTTTGTAGAAGTCATTGAGGATACACACACCAAC  63
            ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  499  GAGAATAACGGAGGTGTGGAACCTGATTTTGTAGAAATCATTGAGGATACACACACCAAC  558

Query  64   AAGAAAACAGGAAAAATTCAAGATGGTTACATCGCAGGCCTCGTTGAGAC  113
            |||||| | |||  ||||||||| |||||||||||||| |||||||||||
Sbjct  559  AAGAAAGCTGGATTAATTCAAGACGGTTACATCGCAGGTCTCGTTGAGAC  608



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12215063007


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5