BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912055
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22030.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein B... 1504 0.0
AT1G77855.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 436 1e-121
> AT1G22030.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G77855.1); Has
99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria
- 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7759164-7760556
REVERSE LENGTH=1316
Length=1316
Score = 1504 bits (814), Expect = 0.0
Identities = 955/1018 (94%), Gaps = 29/1018 (3%)
Strand=Plus/Plus
Query 1 ATGGATCCGTCCTCTGCAAACTCAGTGAACGGATTCTACTCATTTCTAAACAGATCAATG 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 ATGGATCCGTCCTGTGCAAACTCAGTGAACGGATTCTACTCATTTCTAAACAGATCAATG 201
Query 61 GAAGATCTCGAAAGAGTTTATCTTTCAAACAATTTCATGTCCGTACACTTCTTACAGAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GAAGATCTCGAAAGAGTTTATCTTTCAAACAATTTCATGTCCGTACACTTCTTACAGAGA 261
Query 121 GCTCTCTGTCTTCTTCGTACCTCTCACTCACATCTCACTCTCTTAGTTCAAAAACTTCAA 180
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 262 GCTCTCTGTCTTCTCCGTACCTCTCACTCTCATCTCACTCTCTTAGTTCAAAAACTTCAA 321
Query 181 CTTCCCGTCGGTGACAAATGGCTCGATGAGTATATGGACGAAAGCTCTAAACTTTGGGAA 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 322 CTTCCCGTCGGTGACAAATGGCTCGATGAGTATATGGACGAAAGCTCCAAACTTTGGGAA 381
Query 241 GCTTGTCTCGTCATCAAATCCGCTGTCTCTTCCGTCGAAAACTTCTCCTCCGCCGGAATT 300
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 382 GCTTGTCTCGTCATCAAATCCGCCGTCTCCTCCGTCGAAAACTTCTCCTCCGCCGGAATT 441
Query 301 TCAATCGCGTCGACACTCGATGGTCATCACCACCACCGTCGTCTCTCTCCTCAGCTTTCT 360
|| ||||| | || || | || | ||||||||||||||||||||||||||
Sbjct 442 TCGATCGC-T------TC------CA-C-CCTCGACCGTCGTCTCTCTCCTCAGCTTTCT 486
Query 361 CGTCAGGTGATAAGGGCAATATCAGGATGTAGAAGAGAAGCGATTGGGATAGAGGAAGAA 420
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 487 CGTCAGGTGATAAGGGCGATATCAGGATGTAGAAGAGAAGCGATAGGGATAGAGGAAGAA 546
Query 421 AACAGAGCTTTAATGGAGAATC-GAGTTCAAAGGTTTCCGTTTTGGTCGGAACAAACGTC 479
|||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 547 AACAGAGCATTAATGGAGAA-CAGAGTTCAAAGGTTTCCGTTTTGGTCGGAACAAACGTC 605
Query 480 GGCGACGGCGATAGAATCGTCGACGAAGTTACAAAACGGATTCAGTGGTTTTCGCGGCGT 539
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 606 GGCGACGGCGATGGAGTCGTCGACGAAGTTACAAAACGGGTTCAGTGGTTTTCGCGGCGT 665
Query 540 GCTTTACGCGACTAGGAACATGAGTTCGCTTCTCCTTATGGTTTTAATGAACGGTCTCGT 599
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GCTTTACGCGACGAGGAACATGAGTTCGCTTCTCCTTATGGTTTTAATGAACGGTCTCGT 725
Query 600 CTACTGTTTCCCCGGCGA--C-GC-A-GC-AACGCAGACGCAGATAACGCAAACGCAGAG 653
||||||||| ||||| || | || | || ||||||||||||||||||||||||||||||
Sbjct 726 CTACTGTTTTCCCGGAGACGCGGCAACGCAAACGCAGACGCAGATAACGCAAACGCAGAG 785
Query 654 TCAAGTCGGAGGTTTCGCCGGAGCTATGGGGAGGTTGCAGCAGAGAGTGGCGGCTGAGGT 713
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 786 TCAAGTCGGAGGTTTCGCCGGAGCAATGGGGAGGTTGCAGCAGAGAGTGGCGGCTGAGGT 845
Query 714 TGGGAGGATGGGGATAAGGAAAGGTATATTGATGCATGAGTATCGCCGGAGCAAAGCGGC 773
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 846 TGGGAGGATGGGGATAAGGAAAGGAATATTGATGCACGAGTATCGCCGGAGCAAAGCGGC 905
Query 774 GTTGGAGGAGCTTAAAGCAGAGCTGGAGCGGCGATTCTGC---GGCGGTGGCGGCggagg 830
|||||||||||||||||| |||||||||||||| |||||| |||||||| || || ||
Sbjct 906 GTTGGAGGAGCTTAAAGCGGAGCTGGAGCGGCGGTTCTGCGGTGGCGGTGGTGGTGGGGG 965
Query 831 ag-gagaga-g-ggaagaggaggaagagaaggagttgagagagagagtggagaaTCTGAA 887
|| ||| || | ||| |||||||| |||| |||| ||||||||||||| |||||||||||
Sbjct 966 AGAGAGGGAGGAGGAGGAGGAGGACGAGAGGGAGCTGAGAGAGAGAGTTGAGAATCTGAA 1025
Query 888 AGGGTATTTTGGTAATTTAAGGAATGGGACAGAGAGTATAGTGGCGCAAATCGATGATTT 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AGGGTATTTTGGTAATTTAAGGAATGGGACAGAGAGTATAGTGGCGCAAATCGATGATTT 1085
Query 948 CTTCGATGAAATTGTTGAAGGAAGAAAAAAGCTTTTGGATTTCTGCAGCCATAGATGA 1005
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1086 CTTCGATGAGATTGTTGAAGGAAGGAAAAAGCTTTTGGATTTCTGCAGCCATAGATGA 1143
> AT1G77855.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G22030.1);
Has 120 Blast hits to 120 proteins in 17 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29277166-29278518
REVERSE LENGTH=1162
Length=1162
Score = 436 bits (236), Expect = 1e-121
Identities = 444/542 (82%), Gaps = 24/542 (4%)
Strand=Plus/Plus
Query 1 ATGGATCCGTCCTCTGCAAACTCAGTGAACGGATTCTACTCATTTCTAAACAGATCAATG 60
||||||| ||| | | |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 131 ATGGATCAGTCTTGTTCAAACTCAGTAAACGGATTCTACTCGTTTCTAAACAGATCAATG 190
Query 61 GAAGATCTCGAAAGAGTTTATCTTTCAAACAATTTCATGTCCGTACACTTCTTACAGAGA 120
|||||||||||||| |||||| | || ||||| ||||||||| |||| ||| ||||||||
Sbjct 191 GAAGATCTCGAAAGGGTTTATATCTCCAACAACTTCATGTCCTTACAGTTCCTACAGAGA 250
Query 121 GCTC-TCTGTCTTCTTCGTACCTCTCACTCACATCTCACTCT-CTTAGTTCAAAAACTTC 178
| || |||||||||| | ||||||||||| |||||||| || ||| || || ||||||
Sbjct 251 G-TCATCTGTCTTCTAAGAACCTCTCACTCTCATCTCACACTTCTT-GTCCAGAAACTT- 307
Query 179 AACTTCCC-GTCGGTGACAAATGGCTCGATGAGTATATGGACGAAAGCT-CTAAACTTTG 236
||| |||| ||||||||||| ||||| || || || |||||||||| || | || |||||
Sbjct 308 AACCTCCCTGTCGGTGACAAGTGGCTTGACGACTACATGGACGAAA-CTTCCAAGCTTTG 366
Query 237 GGAAG-CTTGTCTCGTCATCAAATCCGCTGTCTCTTCCGTCGAAAACTTCTCCTCCGCCG 295
||| | || | | |||||||||||||||| |||| || |||||| ||| | |||| |||
Sbjct 367 GGACGTCT-GCCACGTCATCAAATCCGCTATCTCCACCATCGAAAGCTTTTGCTCCTCCG 425
Query 296 GAATTTCAATCGCGTCGACACTCGATGGTCA-TCACCACCACCGTCGTCTC-TCTCC--T 351
|| || ||| | || || ||||| || || | ||||||||||||||||| ||||| |
Sbjct 426 CTATCTCCATCACCTCCACCCTCGACGGCCACT-ACCACCACCGTCGTCTCCTCTCCCCT 484
Query 352 CAGCTTTCTCGTCAGGTGATAAGGGCAATATCAGGATGTAGAAGAGAAGCGATTGGGATA 411
||| |||| || ||||||||| | || ||||| |||||||| ||||||||| | ||||||
Sbjct 485 CAGATTTCCCGGCAGGTGATACGAGCGATATCTGGATGTAGGAGAGAAGCGGTGGGGATA 544
Query 412 GAGGAAGAAAACAGAGCTTTAATGGAGAATCG-AGTTCAAAGGTTTCCGTTTTGGTCGGA 470
|| |||||||||||||| |||||||||||||| | ||||||||||||| |||||||||||
Sbjct 545 GAAGAAGAAAACAGAGCATTAATGGAGAATCGTA-TTCAAAGGTTTCCTTTTTGGTCGGA 603
Query 471 ACAAACGT--CGGCGACGGCGATAGAATCGTCGACGAAGTTACAAAACGGATTCAGTGGT 528
||| || | |||||| ||| || || || | ||| |||| ||||| ||||| |||
Sbjct 604 GCAA--GTTACTACGACGGGGATGGAGTCTTC--C-AAGATACAGAACGGTTTCAGCGGT 658
Query 529 TT 530
||
Sbjct 659 TT 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5