BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912062
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22090.1 | Symbols: emb2204 | Protein of unknown function (D... 1221 0.0
> AT1G22090.1 | Symbols: emb2204 | Protein of unknown function
(DUF626) | chr1:7795708-7797425 FORWARD LENGTH=1176
Length=1176
Score = 1221 bits (661), Expect = 0.0
Identities = 882/984 (90%), Gaps = 34/984 (3%)
Strand=Plus/Plus
Query 39 TCCGCAGAGGAATGAATCTGATGGTTTCGATTATCCCGACGGTATTCCAATATCATACAA 98
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 46 TCCGCAGAGGAATGAATCTGACGGTTTTGATTATCCCGACGGTATCCCAATATCATACAA 105
Query 99 TCTCCATAGGCTTCTTCACTTCGACTGTGAAGGCAAG-TATGCAAAGTATCCTTATGGTT 157
||| |||||||||| |||||| || ||||||||| || ||| | ||||||||||||||||
Sbjct 106 TCTTCATAGGCTTCGTCACTTTGAGTGTGAAGGC-AGTTATCCCAAGTATCCTTATGGTT 164
Query 158 CCTTGGTCAAATTTTATGCTATGGTGGGGCTTCACCGTTACAATTTGTTGGAGGGGAAAA 217
| |||||||| |||||||| |||||||| ||||| ||||||||| |||||||||||||||
Sbjct 165 CTTTGGTCAAGTTTTATGCAATGGTGGGACTTCATCGTTACAATGTGTTGGAGGGGAAAA 224
Query 218 ATTTGCAGCTCGATACCCTAAAGAGTTTCAACATGAGAATTAATTGCGGTGCTTCCTCTT 277
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 225 ATTTGCAGCTCGATACCCTAAAGAGTTTCAACATGAGAATCAATTGTGGTGCTTCTTCTT 284
Query 278 ACTACATTACTTTGGCTGCACGCGTTCCAGATAGCGGTTTGCAGCAAACCTTTCAGGTTC 337
||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 285 ACTACATTACTTTGGCTGCACGCGTTCCAGATAGCGGTTTGAAGCAGATCTTTCAGGTTC 344
Query 338 TAGTTCATGAACACCGTCTTGGCAGTTTAGACGTGAGGTGCACCATTGCTAGACCTCGAG 397
||||||||||| | |||||||||||||||||| ||| || || || |||||||||||||
Sbjct 345 TAGTTCATGAAGAGCGTCTTGGCAGTTTAGACATGACATGTACTATCGCTAGACCTCGAG 404
Query 398 TGACCACCAATGTGCCTTTCCTACGTCCCCATAGCGAATCAGAGTATGATTATATGGACA 457
|||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 405 TGACTACCAATGTGCCTTTTCTACGTCCGCACAGCGAATCAGAGTATGATTATATGGACA 464
Query 458 ATGATGAATTGCCTGATTGGCCTTTAGAGATTGCCTTCAATGATAGAAAACGGTTTCAGC 517
|||||||||||||||| ||||||| ||||||||| ||| |||||| |||||||||||| |
Sbjct 465 ATGATGAATTGCCTGACTGGCCTTCAGAGATTGCTTTCGATGATACAAAACGGTTTCATC 524
Query 518 TGGTGAAGGAATCAGAGTTACGAGACAATGATTGGATTCGTCTATATTTGGAACTTACAC 577
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 525 TGGTGAAGGAATCAGAGTTGCGAGACAATGATTGGATTCGACTCTATTTGGAACTTACAC 584
Query 578 TTGTTGCTCACGATAGGTCTCTTACAGTTGTAATGCACTATCTGTCCCAGTTGGAGATTG 637
|||||||||||||||||| ||||||| || | |||||||| ||||||||||||||||
Sbjct 585 TTGTTGCTCACGATAGGTTTCTTACA---GT--T-CACTATCTCTCCCAGTTGGAGATTG 638
Query 638 TGCAAGTGGCGATTGAAGATGTGGAGCCGCCGAATGCGAGTCTCAACACCAAAACTACAT 697
|| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 639 TGAAAGTTGCGATTGAAGAAGTGGAGCAACCGAATGCGAGTCTCAACACCAAAACTACAT 698
Query 698 TTGTCTACATAACTTATAAGGACTTGGAAAAGGCTCGGATTGGTGAGCCGGTTGATCGCA 757
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 699 TTGTCTACATAACTTATAAGGACTTGGCAAAGGCTCAGATTGGTGAGCCGGTTGATCGCA 758
Query 758 AAGCTATTGTTAGAAGAATTATCAAT-ATGACTACGGGACTCTTGAGACTCCGGGGTGAT 816
||||||||||||||| ||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 759 AAGCTATTGTTAGAAAAATCATCAATGA-GACTACGGGACTCTTGAGACTCCGGGGTGAT 817
Query 817 TATTGGAGTGGAGAAA-AAGCTATGAAT-ACT--G-AGGAGGAATCTATGCATTATCTCC 871
|||||||||||||||| ||| | ||| | ||| | ||||||||| ||||| || ||||
Sbjct 818 TATTGGAGTGGAGAAAGAAG-TGTGA-TCACTCCGGAGGAGGAATATATGC-TT--CTCC 872
Query 872 CTGGTGGAGGAAAAGCTCTGAGT-AATGAGCAGCGTTCTAAGAAGCTTAAGCGTCGTTTA 930
||| |||| ||||| || || ||||||||||||||||| || |||||||||||| ||
Sbjct 873 ATGGCGGAGAAAAAGTTC-GAAACAATGAGCAGCGTTCTAAAAAACTTAAGCGTCGTGTA 931
Query 931 GGTGTTCATAGACTATGGCGATTATCTAATCCTAGGTGGTACCAGGCATACAAAAAACGG 990
||||||||||| |||||||||| ||||||||||||| |||||||| ||
Sbjct 932 GGTGTTCATAGGCTATGGCGAT------------GGTGGTACCAGGCTTACAAAAACCGT 979
Query 991 GGCCTCCGCTCGTCGTCTTATTAA 1014
||||||||||||||||||||||||
Sbjct 980 GGCCTCCGCTCGTCGTCTTATTAA 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5