BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912066
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22130.1 | Symbols: AGL104 | AGAMOUS-like 104 | chr1:7812387... 1646 0.0
AT1G77980.1 | Symbols: AGL66 | AGAMOUS-like 66 | chr1:29314841-... 599 2e-170
> AT1G22130.1 | Symbols: AGL104 | AGAMOUS-like 104 | chr1:7812387-7814264
REVERSE LENGTH=1013
Length=1013
Score = 1646 bits (891), Expect = 0.0
Identities = 972/1011 (96%), Gaps = 6/1011 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCGGGTGAAGTTAGAGATCAAGAGAATAGAGAATACAACGAATCGACAAGTTACG 60
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 6 ATGGGTCGGGTGAAATTAGAAATCAAGAGAATAGAGAACACAACGAATCGACAAGTTACG 65
Query 61 TTTTCAAAACGTAGAAATGGTTTGATTAAGAAAGCTTATGAATTGTCGATTCTTTGTGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TTTTCAAAACGTAGAAATGGTTTGATTAAGAAAGCTTATGAATTGTCGATTCTTTGTGAT 125
Query 121 ATCGACATTGCTCTCATTATGTTCTCTCCTTCTGATCGCCTTAGCCTCTTCTCCGGAAAA 180
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 126 ATCGACATTGCTCTTATCATGTTCTCTCCTTCTGATCGCCTTAGCCTTTTCTCCGGAAAA 185
Query 181 ACTAGGATTGAAGACGTTTTTACAAGATTCATCAATCTTCCTAAACAAGAACGAGAGAGT 240
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 186 ACTCGGATTGAAGACGTTTTTTCAAGATTCATCAATCTTCCTAAACAAGAACGAGAGAGT 245
Query 241 GCTCTATACTTTTCC-GACCAGAATAGACGCCCAGATATTCAAAACAAAGAGTGTCTACT 299
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GCTCTATAC-TTTCCTGACCAGAATAGACGCCCAGATATTCAAAACAAAGAGTGTCTACT 304
Query 300 AAGGATTTTGCAGCAACTCAAGTCTGAAAATGACATCGCTCTTCAACTCACGAACCCTGC 359
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 305 AAGGATTCTGCAGCAACTCAAGACTGAAAATGACATCGCTCTTCAAGTCACGAACCCTGC 364
Query 360 AGCTATTAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTGTAGGTTACAACAACAACT 419
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 AGCTATCAACTCTGACGTCGAGGAACTTGAGCATGAAGTTTGTAGGTTACAACAACAACT 424
Query 420 CCAAATGGCAGAAGAAGAACTAAGGAGATACGAACCGGATCCAGTAAGATTCACGACCAT 479
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 425 CCAAATGGCAGAAGAAGAACTAAGGAGATACGAACCGGATCCAATAAGATTCACGACCAT 484
Query 480 GGAGGAATACGAAGTTTATGAGAAGCAACTTCTCGACACTCTAACACATGTTGTCCAAAG 539
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 485 GGAGGAATACGAAGTTTCTGAGAAGCAACTTCTCGACACTCTAACACATGTTGTCCAACG 544
Query 540 GCGAGACCATCTCATGAGCAACCATTTATCTTCTTATGAAGCATCTACTATGCAA-CAAA 598
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 545 GCGAGACCATCTCATGAGCAACCATTTATCTTCGTATGAAGCATCTACTATGCAACCAAA 604
Query 599 GCATTGGTGGTCCTTTTGTTAACGACGGCGTTGAAGGTTGGCTACCTGAAAATGGG-CCT 657
|||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||
Sbjct 605 -CATTGGTGGTCCTTTTGTAAATGACGTCGTTGAAGGTTGGCTACCTGAAAATGGGACC- 662
Query 658 AATCAAACCCATTTATTTGATGCATCGGCCCATTCCAATCAACTCAGAGAATTATCATCG 717
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 663 AATCAAACCCATTTGTTTGATGCATCGGCCCATTCTAACCAACTCAGAGAATTATCATCG 722
Query 718 GCAATGTATGAACCATTGTTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATGAGT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GCAATGTATGAACCATTGTTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATGAGT 782
Query 778 GAATGCCACGTGACGAACCACAACGGTGAAATGTTCCCTGAGTGGGCTCAGGCGTATTCT 837
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 783 GAATGCCACGTGACGAACCACAATGGTGAAATGTTCCCTGAGTGGGCTCAGGCGTATTCA 842
Query 838 TCCTCGGCCTTATTCGCTTCTATGCAACAACAGCATGGAGGTGTGGGTCCCAGTATAGAA 897
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 843 TCCTCGGCCTTATTCGCTTCTATGCAGCAACAGCATGAAGGTGTGGGTCCCAGTATAGAA 902
Query 898 GAGATGATGCCAGCTCAGCAAAGTGATATTCCGGCAGTGACGGCGGAGGCACAACCTGAT 957
|||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||
Sbjct 903 GAGATGATGCCAGCTCAGCAGAGTGATATTCCGGGAGTGACGGCGGAGACACAAGTTGAT 962
Query 958 CATGAAGTCTCCGACTATGAAACAAAGGTTCCTCAGCTCAGTAGCCAATAA 1008
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 963 CATGAAGTCTCCGACTATGAAACAAAGGTTCCTCAACTCAGTAGCCAATAA 1013
> AT1G77980.1 | Symbols: AGL66 | AGAMOUS-like 66 | chr1:29314841-29317067
REVERSE LENGTH=1370
Length=1370
Score = 599 bits (324), Expect = 2e-170
Identities = 591/715 (83%), Gaps = 37/715 (5%)
Strand=Plus/Plus
Query 1 ATGGGTCGGGTGAAGTTAGAGATCAAGA-GAATAGAGAATACAACGAATCGACAAGTTAC 59
|||||||| ||||| || ||||| || | ||||||| || ||||||||||||||||||||
Sbjct 1 ATGGGTCGAGTGAAATTGGAGAT-AAAACGAATAGAAAACACAACGAATCGACAAGTTAC 59
Query 60 GTT-TTCAAAACGTA-GAAATGGT-TTGATTAAGAAAGCTTATGAATTGTCGATTCTTTG 116
|| | ||||| | | |||||||| || || |||||||||||||||||||| ||||||||
Sbjct 60 ATTCTCCAAAA-G-ACGAAATGGTCTT-ATAAAGAAAGCTTATGAATTGTCCATTCTTTG 116
Query 117 TGATATCGACATTGCTCTCATTATGTTCTCTCCTTCTGATCGCCTTAGCCTCTTCTCCGG 176
||| ||||||||||||||| | ||||||||||| |||||||||||||||||||| || ||
Sbjct 117 TGACATCGACATTGCTCTCCTCATGTTCTCTCCCTCTGATCGCCTTAGCCTCTTTTCGGG 176
Query 177 AAAAACTAGGATTGAAGACGTTTT-TACAAGATTCATCAATCTTCCTAAACAAGAACGAG 235
||||| ||||||||||||||||| | | |||| |||||||||| || | ||||||||||
Sbjct 177 CAAAACAAGGATTGAAGACGTTTTCT-CTAGATACATCAATCTTTCTGATCAAGAACGAG 235
Query 236 AGAGTGCTCTA-TACTTTTCCGACCAGAA-TAGACGCCCAGATATT-CAAAACAAAGAGT 292
||| ||||||| || || |||| || || | ||||||||||| || || | ||||||||
Sbjct 236 AGAATGCTCTAGTA-TTCCCCGATCA-AAGTCGACGCCCAGAT-TTCCAGAGCAAAGAGT 292
Query 293 GTCTACTAAGGATTTTGCAGCAACTCAAGTCTGAAAATGACATCGCTCTTCAACTCACGA 352
|||||| ||| |||||||||||||||| |||| ||||| || ||||||||||| || |
Sbjct 293 ATCTACTCCGGACTTTGCAGCAACTCAAGGCTGAGAATGATATTGCTCTTCAACTTACCA 352
Query 353 ACCCTGCAGCTATTAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTGTAGGTTACAAC 412
||||| ||||||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 353 ACCCTACAGCTATCAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTATAAGTTACAAC 412
Query 413 AACAACTCCAAATGGCAGAAGAAGAACTAAGGAGATACGAACCGGATCCAGTAAGATTCA 472
||||||| | |||||||| ||||||||||||| ||||||||| |||||| | || || |
Sbjct 413 AACAACTTCTCATGGCAGAGGAAGAACTAAGGAAATACGAACCAGATCCAATCAGGTTTA 472
Query 473 CGACCATGGAGGAATACGAAGTTTATGAGAAGCAACTTC-TCGACACTCT-AACACATGT 530
| || ||||| || |||||| || ||||||||| || | | ||||| || ||||| |||
Sbjct 473 CAACAATGGAAGAGTACGAAACTTGTGAGAAGCAGCT-CATGGACAC-CTTAACACGTGT 530
Query 531 TG-TCCAAAGGCGAGACCATCTCAT-GAG-CAA--CCATTTATCTTCTTATGAAGCATCT 585
|| || | || || ||| | || ||| ||| ||| |||||||| ||||||||||||
Sbjct 531 CAATC-AACGACGGGAACATAT-ATTGAGTCAAGACCAATTATCTTCATATGAAGCATCT 588
Query 586 ACTATGCAACAA-AGCAT----TGG-TGGTCCTTTTGTTAACGACGGCGTTGAAGGTTGG 639
|| | |||||| |||| ||| ||| ||||||| ||||||| ||||| ||| |||
Sbjct 589 GCTTTACAACAACAGCAAAGCATGGGTGGGCCTTTTGGAAACGACGTCGTTGGAGGATGG 648
Query 640 CT-ACCTGAAAATGGGCCTAATCAAA-CCCATTTATTTGATGCATCGGCCCATTC 692
|| || ||||||||||||||| | || |||||||||| || |||||||| |||||
Sbjct 649 CTGAC-TGAAAATGGGCCTAA-CGAAGCCCATTTATTCGACGCATCGGCACATTC 701
Score = 97.1 bits (52), Expect = 3e-19
Identities = 99/121 (82%), Gaps = 5/121 (4%)
Strand=Plus/Plus
Query 718 GCAATGTATGAACCATTGTTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATGA-G 776
|||||||||||| | || |||||||||||||||||||||||||||||||||||||| | |
Sbjct 703 GCAATGTATGAAACTTTATTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATTATG 762
Query 777 --TGAATGCCAC-GTGACGAACCACAACGGTGAAATGTTCCCTGAGTGGGCTCAGGCGTA 833
||||| ||| ||| | || || |||||||| ||||| | || ||||| || || ||
Sbjct 763 GGTGAAT-CCAATGTGTCAAATCATAACGGTGACATGTTTCAAGAATGGGCCCAAGCCTA 821
Query 834 T 834
|
Sbjct 822 T 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5