BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg912066 Length=1008 Score E Sequences producing significant alignments: (Bits) Value AT1G22130.1 | Symbols: AGL104 | AGAMOUS-like 104 | chr1:7812387... 1646 0.0 AT1G77980.1 | Symbols: AGL66 | AGAMOUS-like 66 | chr1:29314841-... 599 2e-170 > AT1G22130.1 | Symbols: AGL104 | AGAMOUS-like 104 | chr1:7812387-7814264 REVERSE LENGTH=1013 Length=1013 Score = 1646 bits (891), Expect = 0.0 Identities = 972/1011 (96%), Gaps = 6/1011 (1%) Strand=Plus/Plus Query 1 ATGGGTCGGGTGAAGTTAGAGATCAAGAGAATAGAGAATACAACGAATCGACAAGTTACG 60 |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 6 ATGGGTCGGGTGAAATTAGAAATCAAGAGAATAGAGAACACAACGAATCGACAAGTTACG 65 Query 61 TTTTCAAAACGTAGAAATGGTTTGATTAAGAAAGCTTATGAATTGTCGATTCTTTGTGAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66 TTTTCAAAACGTAGAAATGGTTTGATTAAGAAAGCTTATGAATTGTCGATTCTTTGTGAT 125 Query 121 ATCGACATTGCTCTCATTATGTTCTCTCCTTCTGATCGCCTTAGCCTCTTCTCCGGAAAA 180 |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| Sbjct 126 ATCGACATTGCTCTTATCATGTTCTCTCCTTCTGATCGCCTTAGCCTTTTCTCCGGAAAA 185 Query 181 ACTAGGATTGAAGACGTTTTTACAAGATTCATCAATCTTCCTAAACAAGAACGAGAGAGT 240 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 186 ACTCGGATTGAAGACGTTTTTTCAAGATTCATCAATCTTCCTAAACAAGAACGAGAGAGT 245 Query 241 GCTCTATACTTTTCC-GACCAGAATAGACGCCCAGATATTCAAAACAAAGAGTGTCTACT 299 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 GCTCTATAC-TTTCCTGACCAGAATAGACGCCCAGATATTCAAAACAAAGAGTGTCTACT 304 Query 300 AAGGATTTTGCAGCAACTCAAGTCTGAAAATGACATCGCTCTTCAACTCACGAACCCTGC 359 ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 305 AAGGATTCTGCAGCAACTCAAGACTGAAAATGACATCGCTCTTCAAGTCACGAACCCTGC 364 Query 360 AGCTATTAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTGTAGGTTACAACAACAACT 419 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 AGCTATCAACTCTGACGTCGAGGAACTTGAGCATGAAGTTTGTAGGTTACAACAACAACT 424 Query 420 CCAAATGGCAGAAGAAGAACTAAGGAGATACGAACCGGATCCAGTAAGATTCACGACCAT 479 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 425 CCAAATGGCAGAAGAAGAACTAAGGAGATACGAACCGGATCCAATAAGATTCACGACCAT 484 Query 480 GGAGGAATACGAAGTTTATGAGAAGCAACTTCTCGACACTCTAACACATGTTGTCCAAAG 539 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 485 GGAGGAATACGAAGTTTCTGAGAAGCAACTTCTCGACACTCTAACACATGTTGTCCAACG 544 Query 540 GCGAGACCATCTCATGAGCAACCATTTATCTTCTTATGAAGCATCTACTATGCAA-CAAA 598 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 545 GCGAGACCATCTCATGAGCAACCATTTATCTTCGTATGAAGCATCTACTATGCAACCAAA 604 Query 599 GCATTGGTGGTCCTTTTGTTAACGACGGCGTTGAAGGTTGGCTACCTGAAAATGGG-CCT 657 |||||||||||||||||| || |||| |||||||||||||||||||||||||||| || Sbjct 605 -CATTGGTGGTCCTTTTGTAAATGACGTCGTTGAAGGTTGGCTACCTGAAAATGGGACC- 662 Query 658 AATCAAACCCATTTATTTGATGCATCGGCCCATTCCAATCAACTCAGAGAATTATCATCG 717 |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| Sbjct 663 AATCAAACCCATTTGTTTGATGCATCGGCCCATTCTAACCAACTCAGAGAATTATCATCG 722 Query 718 GCAATGTATGAACCATTGTTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATGAGT 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 723 GCAATGTATGAACCATTGTTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATGAGT 782 Query 778 GAATGCCACGTGACGAACCACAACGGTGAAATGTTCCCTGAGTGGGCTCAGGCGTATTCT 837 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 783 GAATGCCACGTGACGAACCACAATGGTGAAATGTTCCCTGAGTGGGCTCAGGCGTATTCA 842 Query 838 TCCTCGGCCTTATTCGCTTCTATGCAACAACAGCATGGAGGTGTGGGTCCCAGTATAGAA 897 |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 843 TCCTCGGCCTTATTCGCTTCTATGCAGCAACAGCATGAAGGTGTGGGTCCCAGTATAGAA 902 Query 898 GAGATGATGCCAGCTCAGCAAAGTGATATTCCGGCAGTGACGGCGGAGGCACAACCTGAT 957 |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||| Sbjct 903 GAGATGATGCCAGCTCAGCAGAGTGATATTCCGGGAGTGACGGCGGAGACACAAGTTGAT 962 Query 958 CATGAAGTCTCCGACTATGAAACAAAGGTTCCTCAGCTCAGTAGCCAATAA 1008 ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 963 CATGAAGTCTCCGACTATGAAACAAAGGTTCCTCAACTCAGTAGCCAATAA 1013 > AT1G77980.1 | Symbols: AGL66 | AGAMOUS-like 66 | chr1:29314841-29317067 REVERSE LENGTH=1370 Length=1370 Score = 599 bits (324), Expect = 2e-170 Identities = 591/715 (83%), Gaps = 37/715 (5%) Strand=Plus/Plus Query 1 ATGGGTCGGGTGAAGTTAGAGATCAAGA-GAATAGAGAATACAACGAATCGACAAGTTAC 59 |||||||| ||||| || ||||| || | ||||||| || |||||||||||||||||||| Sbjct 1 ATGGGTCGAGTGAAATTGGAGAT-AAAACGAATAGAAAACACAACGAATCGACAAGTTAC 59 Query 60 GTT-TTCAAAACGTA-GAAATGGT-TTGATTAAGAAAGCTTATGAATTGTCGATTCTTTG 116 || | ||||| | | |||||||| || || |||||||||||||||||||| |||||||| Sbjct 60 ATTCTCCAAAA-G-ACGAAATGGTCTT-ATAAAGAAAGCTTATGAATTGTCCATTCTTTG 116 Query 117 TGATATCGACATTGCTCTCATTATGTTCTCTCCTTCTGATCGCCTTAGCCTCTTCTCCGG 176 ||| ||||||||||||||| | ||||||||||| |||||||||||||||||||| || || Sbjct 117 TGACATCGACATTGCTCTCCTCATGTTCTCTCCCTCTGATCGCCTTAGCCTCTTTTCGGG 176 Query 177 AAAAACTAGGATTGAAGACGTTTT-TACAAGATTCATCAATCTTCCTAAACAAGAACGAG 235 ||||| ||||||||||||||||| | | |||| |||||||||| || | |||||||||| Sbjct 177 CAAAACAAGGATTGAAGACGTTTTCT-CTAGATACATCAATCTTTCTGATCAAGAACGAG 235 Query 236 AGAGTGCTCTA-TACTTTTCCGACCAGAA-TAGACGCCCAGATATT-CAAAACAAAGAGT 292 ||| ||||||| || || |||| || || | ||||||||||| || || | |||||||| Sbjct 236 AGAATGCTCTAGTA-TTCCCCGATCA-AAGTCGACGCCCAGAT-TTCCAGAGCAAAGAGT 292 Query 293 GTCTACTAAGGATTTTGCAGCAACTCAAGTCTGAAAATGACATCGCTCTTCAACTCACGA 352 |||||| ||| |||||||||||||||| |||| ||||| || ||||||||||| || | Sbjct 293 ATCTACTCCGGACTTTGCAGCAACTCAAGGCTGAGAATGATATTGCTCTTCAACTTACCA 352 Query 353 ACCCTGCAGCTATTAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTGTAGGTTACAAC 412 ||||| ||||||| |||||||||||||||||||||||||||||||||| || |||||||| Sbjct 353 ACCCTACAGCTATCAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTATAAGTTACAAC 412 Query 413 AACAACTCCAAATGGCAGAAGAAGAACTAAGGAGATACGAACCGGATCCAGTAAGATTCA 472 ||||||| | |||||||| ||||||||||||| ||||||||| |||||| | || || | Sbjct 413 AACAACTTCTCATGGCAGAGGAAGAACTAAGGAAATACGAACCAGATCCAATCAGGTTTA 472 Query 473 CGACCATGGAGGAATACGAAGTTTATGAGAAGCAACTTC-TCGACACTCT-AACACATGT 530 | || ||||| || |||||| || ||||||||| || | | ||||| || ||||| ||| Sbjct 473 CAACAATGGAAGAGTACGAAACTTGTGAGAAGCAGCT-CATGGACAC-CTTAACACGTGT 530 Query 531 TG-TCCAAAGGCGAGACCATCTCAT-GAG-CAA--CCATTTATCTTCTTATGAAGCATCT 585 || || | || || ||| | || ||| ||| ||| |||||||| |||||||||||| Sbjct 531 CAATC-AACGACGGGAACATAT-ATTGAGTCAAGACCAATTATCTTCATATGAAGCATCT 588 Query 586 ACTATGCAACAA-AGCAT----TGG-TGGTCCTTTTGTTAACGACGGCGTTGAAGGTTGG 639 || | |||||| |||| ||| ||| ||||||| ||||||| ||||| ||| ||| Sbjct 589 GCTTTACAACAACAGCAAAGCATGGGTGGGCCTTTTGGAAACGACGTCGTTGGAGGATGG 648 Query 640 CT-ACCTGAAAATGGGCCTAATCAAA-CCCATTTATTTGATGCATCGGCCCATTC 692 || || ||||||||||||||| | || |||||||||| || |||||||| ||||| Sbjct 649 CTGAC-TGAAAATGGGCCTAA-CGAAGCCCATTTATTCGACGCATCGGCACATTC 701 Score = 97.1 bits (52), Expect = 3e-19 Identities = 99/121 (82%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 718 GCAATGTATGAACCATTGTTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATGA-G 776 |||||||||||| | || |||||||||||||||||||||||||||||||||||||| | | Sbjct 703 GCAATGTATGAAACTTTATTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATTATG 762 Query 777 --TGAATGCCAC-GTGACGAACCACAACGGTGAAATGTTCCCTGAGTGGGCTCAGGCGTA 833 ||||| ||| ||| | || || |||||||| ||||| | || ||||| || || || Sbjct 763 GGTGAAT-CCAATGTGTCAAATCATAACGGTGACATGTTTCAAGAATGGGCCCAAGCCTA 821 Query 834 T 834 | Sbjct 822 T 822 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49380166501 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5