BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912067
Length=219
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22140.1 | Symbols: | unknown protein; Has 40 Blast hits to... 363 5e-100
> AT1G22140.1 | Symbols: | unknown protein; Has 40 Blast hits
to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa
- 9; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes
- 3 (source: NCBI BLink). | chr1:7814763-7815631 REVERSE
LENGTH=476
Length=476
Score = 363 bits (196), Expect = 5e-100
Identities = 210/217 (97%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGCCGATAATGGAGAAACGCCAAAACCTACACAGATCTCAATTTCTAAAGATCAA 60
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 55 ATGGGAGCCGGTAATGGAGAAACGCCAAAACCTACACAGATTTCAATTTCTAAAGATCAA 114
Query 61 TTCCTCGCGTGGAAACGCCAAAAGGATGCTGAGTTATTAGCTAAACAAGCTGAAGTAGCA 120
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 115 TTCCTCGCTTGGAAACGCCAAAAGGATGCTGAGTTATTAGCCAAACAAGCTGAAGCAGCA 174
Query 121 AGGAAACGTCAAGAGGACATAGCTTCAGGTCGTGTTCCAATGAATGGTCGTGAGCTTTTC 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 AGGAAACGACAAGAGGACATAGCTTCAGGTCGTGTTCCAATGAATGGTCGTGAGCTTTTC 234
Query 181 TTGCATGAGCCTTGGGTTTTCGACGATACTCACCATT 217
|||||||||||||||||||||||||||||||| ||||
Sbjct 235 TTGCATGAGCCTTGGGTTTTCGACGATACTCATCATT 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9802211055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5