BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912122
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22670.1 | Symbols: | Protease-associated (PA) RING/U-box z... 1797 0.0
> AT1G22670.1 | Symbols: | Protease-associated (PA) RING/U-box
zinc finger family protein | chr1:8021854-8023516 REVERSE LENGTH=1269
Length=1269
Score = 1797 bits (973), Expect = 0.0
Identities = 1189/1289 (92%), Gaps = 32/1289 (2%)
Strand=Plus/Plus
Query 1 ATGAATCTTGTTGTTCTGCTAATCCTAACATTACTCCTTTTCATTGTTTCATATGTAGTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGAATCTTGTTGTTCTGCTAATCCTAACATTACTCCTTTTCATTGTTTCTTATGTAGTA 60
Query 61 GACGCAGGCCAAGTCATTTT-GATGAATTCCAACATAACTCGTTCTTTTGTCGGCATTGA 119
|||||||||||||||||||| | || |||||||||||||||| |||||||||| ||| ||
Sbjct 61 GACGCAGGCCAAGTCATTTTGGTTG-ATTCCAACATAACTCGCTCTTTTGTCGACATGGA 119
Query 120 AGCTGATTTCTCTCCATTAGTGACTACGGTGGAAACCGGAGTGGTTTATGTAGCTGAGCC 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCTGATTTCTCTCCATCAGTGACTACGGTGGAAACCGGAGTGGTTTATGTAGCTGAGCC 179
Query 180 TCTCAACGCTTGCCGAAACTTGAGGAATAAACCGGAGCAGAGCCCTAATGGTACTTCCCC 239
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 TCTCAACGCTTGCCGAAACTTGAGGAATAAACCGGAGCAGAGCCCTTATGGTACTTCCCC 239
Query 240 TTTTGTTTTGATCATAAGAGGAGGCTGCAGTTTTGAGTACAAAGTCAGAAACGCGCAGAG 299
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTTGTGTTGATCATAAGAGGAGGCTGCAGTTTTGAGTACAAAGTCAGAAACGCGCAGAG 299
Query 300 AAGCGGTTTCAAGGCTGCCATTGTCTATGACAATGTGGACCGCAAATTCTTATTCGCAAT 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 300 AAGCGGTTTCAAGGCTGCCATTGTCTATGACAATGTGGACCGCAACTTCTTATCCGCAAT 359
Query 360 GGGGGGAGACTCGGAAGGTATAAAGATTCAAGCGGTTTTTGTGACGAAAACTGCCGGAGA 419
||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 360 GGGGGGAGACTCGGACGGTATAAAGATTCAAGCGGTTTTTGTGATGAAGAGAGCCGGAGA 419
Query 420 AATTCTCAAGAAGTACGCTGGTTTGGCGGAAACGGAAGTCATGTTGATA--TC-TAATTC 476
||| |||||||||||||| |||| || ||||| ||||||||||||| | || |||| |
Sbjct 420 AATGCTCAAGAAGTACGCGGGTTCGGAGGAAATGGAAGTCATGTTGGTTCCTCCTAATAC 479
Query 477 AGAGGACTCGGTGTGGTCCTTGTACGCTTCCATAGCATTGATCTTGTTGCTGGCTATTTT 536
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 AGAGGACTCGGTGTGGTCATTGTACGCTTCCATAGCATTGATCTTGTCGCTGGCTATTTT 539
Query 537 TTGTGTTATGGCCGCTTGTATCTTCTTCTATAGATATTGCACAACACTTAGAAACTCTAC 596
||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 540 TTGTGTTATGGTTACTTGTGTCTTCTTCTATAGATATTGCTCAACAATTAGAAACTCTAC 599
Query 597 ATCTCAGTTCAATGGGATGTGCTGTAAAATGGTGAATGCAATGCCGAGTGTTACATTCAC 656
|||||| ||||||||||||||| ||| || |||||| |||||||||||||||||||||||
Sbjct 600 ATCTCAATTCAATGGGATGTGCCGTAGAACGGTGAAAGCAATGCCGAGTGTTACATTCAC 659
Query 657 TTATGCAAAAATAGACAACACTACTGGCTTCTCTTGCGCTATCTGCCTCGAAGACTACAT 716
|| ||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 660 TTGTGCAAAAATAGACAACACTACAGGTTTCTCTTGCGCTATCTGCCTTGAAGACTACAT 719
Query 717 TGTTGGAGACAAGCTCAGGGTCTTACCTTGCAGTCACAAGTTTCATGTCTCATGCGTAGA 776
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 720 TGTTGGAGACAAGCTCAGGGTCTTACCTTGCAGTCACAAGTTTCATGTCGCTTGCGTAGA 779
Query 777 CTCGTGGCTTATATCATGGAGAACGTTTTGTCCAGTCTGTAAACGGGATGCGAGAACGAG 836
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 CTCGTGGCTTATATCATGGAGAACGTTTTGTCCAGTGTGTAAACGGGATGCGAGAACGAC 839
Query 837 CGCAGATGAGCCACCAGCTACAGAGAGCACACCATTGCTAAGCTCTTCCATTGCAACATC 896
|||||||||||||| |||||||||||||||||| || || || |||||||||||||||||
Sbjct 840 CGCAGATGAGCCACTAGCTACAGAGAGCACACCGTTTCTCAGTTCTTCCATTGCAACATC 899
Query 897 ATCTGTAGTGTGTATAGACCCTCCTCCTTTGGGATCCTCAGTTTCTTTCTC---A-C--A 950
|||| |||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct 900 ATCTCTAGTGTGTATAGACTCTCCTCCTTTGGGATCCTCAGTTTCTTTCTCTCCAGCGCA 959
Query 951 TGCGAGCCCGTCCTACATTCAACAGTTTGTCAGGGTTTCCTCTCATCGAAGCCGCTCTTC 1010
|| |||| |||||| |||||| || ||||||||| | | | || | ||
Sbjct 960 TGTGAGCTCGTCCTTCATTCATCAATTTGTCAGG-T--C-T-TC---G---CC------- 1001
Query 1011 ACCAATAAATGGCAGCCGTATCTCTGAGAATCTCAGGCGACAAGCCTCACCATTGCAGTC 1070
| | | ||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1002 A--A-TGAATGGCAGCCGTATCTCAGAGAATCTTAGGCGACAAGCCTCACCATTACAGTC 1058
Query 1071 ATCATCACAGAGATCATACCTCTCTATGAAGTCTTTCCATTCACTGGGTTATTCGACCAT 1130
|||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1059 ATCATCACAGCGATCACACCTCTCTATGAAGTCTTCCCATTCACTGGGTTATTCGACCAT 1118
Query 1131 GTCACCTCTCAACGCGATGGACATGTCACCATACCGGCCATACCCAAGCAATGCATCACC 1190
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1119 GTCACCTCTCAACGCGATGGGCATGTCACCATACCGGCCATACCCAAGCAATGCATCGCC 1178
Query 1191 TGGATTATTCAGTTCAACCAATCATCTGCTTTCCAATTATACAGCAAATACATTCTCTCC 1250
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 TGGATTATTCAGTTCAACAAATCATCTGCTTTCCAATTATACAGCAAATACATTCTCTCA 1238
Query 1251 TTTCGCCTCTGCACACTCGCTTCCGGACT 1279
|||||||||||||||||||||||||||||
Sbjct 1239 TTTCGCCTCTGCACACTCGCTTCCGGACT 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5