BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912146
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22900.1 | Symbols: | Disease resistance-responsive (dirige... 416 9e-116
AT5G42500.1 | Symbols: | Disease resistance-responsive (dirige... 239 2e-62
AT5G42510.1 | Symbols: | Disease resistance-responsive (dirige... 220 7e-57
> AT1G22900.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr1:8103659-8104505 REVERSE
LENGTH=847
Length=847
Score = 416 bits (225), Expect = 9e-116
Identities = 262/279 (94%), Gaps = 6/279 (2%)
Strand=Plus/Plus
Query 169 GTGGGGAGAGCTCAGGGGTTATACGCATCGACGGACATGAAAACGTTTGGCTTCTTCTCA 228
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || ||
Sbjct 327 GTGGGGAGAGCTCAGGGGTTGTACGCATCGACGGACATGAAAACGTTTGG-TT-TT-ACA 383
Query 229 ATGGTCTTTAACTTGGCGTTCACGGAAGGAGAGTTTAACGGCAGCACCGCTGCGATGTAT 288
|||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 384 ATGGTCTTTAACTTTGTGTTCACGGAAGGAGAGTTTAACGGCAGCACCGCTGCGTTGTAT 443
Query 289 GGACGTAATCCGATACTGCTGGAGGAGAGAGAGTTGCCGATCATCGGAGGTACCGGCGCT 348
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 444 GGACGGAATCCGATACTGCTGGAGGAGAGAGAGTTGCCGATCATCGGAGGTACCGGCGAT 503
Query 349 TTCAGGTTTGCTAGAGGCTATGCAC-GACCAAAGACTTATAAAGTTGTTAATATAGATGC 407
||||||||||||||||| ||||||| | |||||||||||||| ||||| |||||||||||
Sbjct 504 TTCAGGTTTGCTAGAGGATATGCACTG-CCAAAGACTTATAAGGTTGTAAATATAGATGC 562
Query 408 CGTGGTTGAGTATAATGTCTTCATTTGGCATTTCACTTT 446
|||||||||||||||||||||||||||||||| |||||
Sbjct 563 CGTGGTTGAGTATAATGTCTTCATTTGGCATTA-ACTTT 600
Score = 246 bits (133), Expect = 1e-64
Identities = 157/169 (93%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1 ATGGCCACACcttttctgcttcttcttcttcctatgatcttctcatctattctccttctt 60
||||| |||||||||||||||||||| |||||| |||| |||||| || |||||||||||
Sbjct 33 ATGGCTACACCTTTTCTGCTTCTTCTACTTCCTTTGATATTCTCAACTGTTCTCCTTCTT 92
Query 61 ACCATCACCGTTACACAATCCGAAGCTTACTCCAAAACGACGCCATTTGAAGGAAATAAG 120
||||||||||| ||||||||| || |||||||||||||||| || ||| |||||||||||
Sbjct 93 ACCATCACCGTAACACAATCCAAACCTTACTCCAAAACGACTCCGTTTCAAGGAAATAAG 152
Query 121 CCGGATAAACTCACACACCTCCACTTCTACTTCCATGACATCATCTCCG 169
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 CCGGATAAACTCACACACCTCCACTTCTACTTCCATGACATCATCTCCG 201
> AT5G42500.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr5:16994240-16994930 REVERSE
LENGTH=691
Length=691
Score = 239 bits (129), Expect = 2e-62
Identities = 236/286 (83%), Gaps = 14/286 (5%)
Strand=Plus/Plus
Query 169 GTGGGGAGAGCTCAGGGGTTATACGCATCGACGGACATGAA-AACGTTTGGCTTCTTCTC 227
||||| |||||||| ||| | ||||||| ||| | |||||| ||| | | |||| |
Sbjct 303 GTGGGAAGAGCTCAAGGGATGTACGCATTGACAGCCATGAAGAAC-ATAAG---CTTCAC 358
Query 228 AATGGTCTTTAACTTGGCGTTCACGGAAGGAGAGTTTAACGGCAGCACCGCT-GCGATGT 286
|||||||||||||||||| || |||| ||||||||||| || ||||||| | |||||||
Sbjct 359 AATGGTCTTTAACTTGGCTTTTACGGCGGGAGAGTTTAATGGAAGCACCG-TCGCGATGT 417
Query 287 ATGGACGTAATCCGATACTGCT-GGAGGAGAGAGAGTTGCCGATCATCGGAGGTACCGGC 345
||||||| ||| |||| | | | ||| ||||||| |||| || || ||||| |||||
Sbjct 418 ATGGACGGAATGAGATA-TTTTCGAAGGTGAGAGAGATGCCAATTATTGGAGGAACCGGT 476
Query 346 GCTTTCAGGTTTGCTAGAGGCTATGCAC-GACCAAAGACTTATAAAGTTGTTAATATAGA 404
|||||||||||||||||||||||||||| | |||| ||||||||| |||||| | ||||
Sbjct 477 GCTTTCAGGTTTGCTAGAGGCTATGCACAGGCCAA-GACTTATAAGGTTGTTGGTCTAGA 535
Query 405 TGCCGTGGTTGAGTATAATGTCTTCATTTGGCATT--TCACTTTGC 448
||||||||| ||||||||||||||||||||||||| ||| |||||
Sbjct 536 TGCCGTGGTCGAGTATAATGTCTTCATTTGGCATTAATCA-TTTGC 580
> AT5G42510.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr5:16998268-16998816 REVERSE
LENGTH=549
Length=549
Score = 220 bits (119), Expect = 7e-57
Identities = 228/278 (82%), Gaps = 17/278 (6%)
Strand=Plus/Plus
Query 169 GTGGGGAGAGCTCAGGGGTTATACGCATCGACGGACATGAA-AACGTTTGGCTTCTTCTC 227
||||| |||||||||||| | |||||||| || | |||||| || | | ||||| |
Sbjct 280 GTGGGAAGAGCTCAGGGGATGTACGCATCAACAGCCATGAAGGAC--ATAG--TCTTCAC 335
Query 228 AATGGTCTTTAACT-TGGCGTTCACGGAAGGAGAGTTTAACGGCAGCACCGCT-GCGATG 285
|||||||||||||| | | ||||||| |||||||||||| || |||||| | ||| ||
Sbjct 336 AATGGTCTTTAACTAT-GTTTTCACGGCAGGAGAGTTTAATGGAAGCACC-ATCGCGGTG 393
Query 286 TATGGACGTAATCCGATA-CTGCT-GGAGGAGAGAGAGTTGCCGATCATCGGAGGTACCG 343
|||||||| ||| |||| | | | ||| ||||||||||||||| || ||||| || |
Sbjct 394 TATGGACGGAAT--GATATATTTTCGAAGGTGAGAGAGTTGCCGATTATTGGAGGAACTG 451
Query 344 GCGCTTTCAGGTTTGCTAGAGGCTATGCAC-GACCAAAGACTTATAA-AGTTGTTAATAT 401
| |||||||||||||||||||||||||||| | |||| ||||||||| | ||||| | |
Sbjct 452 GTGCTTTCAGGTTTGCTAGAGGCTATGCACTGCCCAA-GACTTATAAGA-TTGTTGGTCT 509
Query 402 AGATGCCGTGGTTGAGTATAATGTCTTCATTTGGCATT 439
|||||||||||| |||||||||||||||||||||||||
Sbjct 510 AGATGCCGTGGTCGAGTATAATGTCTTCATTTGGCATT 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23007239326
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5