BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912154
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22980.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1208 0.0
AT1G22970.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 449 2e-125
> AT1G22980.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G22970.1);
Has 52 Blast hits to 50 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8132444-8134350
REVERSE LENGTH=1470
Length=1470
Score = 1208 bits (654), Expect = 0.0
Identities = 812/889 (91%), Gaps = 8/889 (1%)
Strand=Plus/Plus
Query 3 GCTATGGACTGGAGAATCTCCAAAAGCTGAATCACTTACGGAGACAATGGAGTCTTACTT 62
|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 362 GCTATGGACTGGAGAAACTCCAAAAGCTGAATCAGTTAAGGAGACAATGGAGTCTTACTT 421
Query 63 CAATGCTCTTCAT-GGGTTTTTGCTCTGTT-TCCATGGAAGCACTCTTGGTGCTGGACCT 120
||| ||||||| | |||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 422 CAAGGCTCTTC-TAGGGTTTTTGCTCTGTTGT-CATGGAAGCACTCTTGGTGCTGGTCCT 479
Query 121 ACTCTGTCTTCAATCATCCACGGTTCTGTTAAGCAAATCGTTGATTCCAGCTTCAGATTG 180
||| ||||||||||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 ACTTTGTCTTCAATCGTACACGGTTCTGTTAAGCAAATCGTTGACTCCAGCTTCAGATTG 539
Query 181 TTTCAGGGTTCTGTCTCCCTTTACGAGGGATCATATGAAAAAGGCAAAAAGCCGTCTATT 240
|||||||||||||| || |||||||| |||||||||||||| || ||||||||||||||
Sbjct 540 TTTCAGGGTTCTGTATCTCTTTACGATGGATCATATGAAAAGGGGGAAAAGCCGTCTATT 599
Query 241 CCGCAGCTTTCAGGAGCAGTTTCGGAGGCATGCTTTAGTTTCAAGAAGATGCCTATAACA 300
||||||||||||||||||||| ||||||||||| ||||||||||||| | |||| ||||
Sbjct 600 TCGCAGCTTTCAGGAGCAGTTTTGGAGGCATGCTCTAGTTTCAAGAAGGTTCCTACAACA 659
Query 301 AACCTTGTCGCGATTGGCAATGCTATTTCGCAGGTTGCTGTTATCATAAAGGATGTTCTT 360
||||| |||||||||||| ||||||||| |||||| | |||||||| ||||||||||||
Sbjct 660 AACCTCATCGCGATTGGCAGTGCTATTTCTCAGGTTTCGGTTATCATGAAGGATGTTCTT 719
Query 361 AATGAGATGAAAAAAGTGAAGCCAGCTTGTCCTTTGAGTGAGTGTGAGGCATCTGGTGAT 420
|||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 720 AATGAGATGAAAAAAGTGAAACCAGCTTGTCCTTCAAGTGAGGGTGAGGCATCTGGTGAT 779
Query 421 GATTTTTCTCCTAAGCAAATAGAAGTTGCTAAAATGGTGGCTGACATTGCGTCTGAGGCG 480
|||||||||||| ||||||||||||||||||||||||| |||||||||| || |||||||
Sbjct 780 GATTTTTCTCCTGAGCAAATAGAAGTTGCTAAAATGGTTGCTGACATTGTGTATGAGGCG 839
Query 481 ATGATGGTGATAATAGTCATTCGAGTAATCACCAGGACAATGGAGGAGGA-ACATCCAAA 539
|||| ||| |||||||||||||||||||||||||||| |||||| |||| | || ||||
Sbjct 840 ATGACGGTAATAATAGTCATTCGAGTAATCACCAGGATGATGGAGAAGGAGA-ATTCAAA 898
Query 540 GGAAAATAGCGGGTTTGTGGACTCGCTAGAGAAGCTACTAAAGCTGTGTCAAAGAACTGG 599
|| ||||||| ||||||||| ||||||||||||||||| ||| |||||||||||| |||
Sbjct 899 TGAGAATAGCGTGTTTGTGGAGTCGCTAGAGAAGCTACTTAAGTTGTGTCAAAGAAGTGG 958
Query 600 AGTACTGATAGAAGAGCTTGGAACTTGCGTTTATCATCCACCGCTGAAGATAGACAAGAT 659
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGTAGTGATAGAAGAGCTTGGTACTTGCGTTTATCATCCACCGCTGAAGATAGACAAGAT 1018
Query 660 GATTCAAACGGTGAAGGTACTAGAGGGAAACCTTGATGAAGTTAAGGCTCAAGTTGAGCA 719
| ||||||||||||| ||||||||||||| || ||||||||| |||||||||||||| |
Sbjct 1019 AACTCAAACGGTGAAGATACTAGAGGGAAATCTCGATGAAGTTGAGGCTCAAGTTGAGTA 1078
Query 720 TATGAAGAGGTCTTCCAACG-CTTTCCCGGGAGTTTGCAGAAAGCTGCGAGACGCGATCA 778
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1079 TATGAAGAGGTCTTCCAACGCCTTT-CCGGGAGTTTGCAGAAAGCTGCGAGACGCGATCA 1137
Query 779 AACTCATGGAAGTTGAATTGGACAAAAGAAAGCATCTGAATCAAATTCTGATTTCTCATC 838
||||||||||||||| |||||| ||||||||| || ||||||||||||||||||||| ||
Sbjct 1138 AACTCATGGAAGTTGGATTGGAAAAAAGAAAGGATTTGAATCAAATTCTGATTTCTCGTC 1197
Query 839 AAAAGACTATCTACAATACTCTTCAGTTGTTCGATCCAACAGCGTCTCC 887
|||| ||| |||||||| |||| |||||||| ||||||||||| |||||
Sbjct 1198 AAAACACTCTCTACAATGCTCTCCAGTTGTTGGATCCAACAGCTTCTCC 1246
> AT1G22970.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G71150.1);
Has 134 Blast hits to 132 proteins in 48 species: Archae -
0; Bacteria - 0; Metazoa - 66; Fungi - 10; Plants - 48; Viruses
- 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:8130716-8132208
REVERSE LENGTH=1207
Length=1207
Score = 449 bits (243), Expect = 2e-125
Identities = 368/427 (86%), Gaps = 14/427 (3%)
Strand=Plus/Plus
Query 1 ATGCTATGGACTGGAGAATCTCCAAAAGCTGAATCACTTACGGAGACAATGGAGTCTTAC 60
|||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 184 ATGCTATGGACTGGAGAATCTCCAAAAGCTGATTCACTTAAAGAGACTATGGAGTCTTAC 243
Query 61 TTCAATGCTCTTCATGGGTTTTTGCTCTGTTTCCATGGAAGCACTCTTGGTGCTGGACCT 120
|||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 244 TTCAATGCCCTTCAAGGGTTTTTACTCTGTTGCCATGGAAGCACTCTTGGTGCTGGACCT 303
Query 121 ACTCTGTCTTCAATCATCCACGGTTCTGTTAAGCAAATCGTTGATTCCAGCTTCAGATTG 180
|| || ||||||||||| || | ||||||||||||||| |||||||| ||||||||||||
Sbjct 304 ACGCTTTCTTCAATCATACATGTTTCTGTTAAGCAAATTGTTGATTCTAGCTTCAGATTG 363
Query 181 TTTCAGGGTTCTGTCTCCCTTTACGAGGGATCATATGAAAAAGGCA-AA-AAGCCGTCTA 238
|| ||||||||||| || || ||||||||||| ||||| || || | || ||||||||||
Sbjct 364 TTGCAGGGTTCTGTTTCTCTATACGAGGGATCGTATGAGAA-GG-ATAAGAAGCCGTCTA 421
Query 239 TTCCGCAGCTTTCAGGAGCAGTTTCGGAGGCATGCTTT-AGTTTCAAGAAGATGCCTATA 297
|||||||||| || |||| |||| ||| ||||| || |||||||||||| | ||| |
Sbjct 422 TTCCGCAGCTCTCGGGAGTGGTTTGGGAAGCATG-TTCCAGTTTCAAGAAGGTTCCTGCA 480
Query 298 ACAAACCTTG-TCGCGATTGGCA-ATGCTATTTCGCAGGTTGCTGTTATC-ATAAAGGAT 354
|||||| || | |||||||| | | |||||| | |||||||| ||| || || ||||||
Sbjct 481 ACAAACATTACT-GCGATTGGTAGA-GCTATTACACAGGTTGCGGTT-TCCATGAAGGAT 537
Query 355 GTTCTTAATGAGATGAAAAAAGTGAAGCCAGCTTGTCCTTTGAG-TGAGTGTGAGGCATC 413
||||||| ||||||||| ||||||||||||| |||||||| | ||| |||||||||||
Sbjct 538 GTTCTTAGGGAGATGAAAGAAGTGAAGCCAGCGTGTCCTTT-ATCTGAATGTGAGGCATC 596
Query 414 TGGTGAT 420
|||||||
Sbjct 597 TGGTGAT 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5