BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912174
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24190.1 | Symbols: SIN3, ATSIN3, SNL3 | SIN3-like 3 | chr1:... 1249 0.0
AT1G70060.1 | Symbols: SNL4 | SIN3-like 4 | chr1:26383244-26389... 337 3e-91
AT1G24200.1 | Symbols: | Paired amphipathic helix (PAH2) super... 289 7e-77
> AT1G24190.1 | Symbols: SIN3, ATSIN3, SNL3 | SIN3-like 3 | chr1:8563558-8570505
REVERSE LENGTH=4441
Length=4441
Score = 1249 bits (676), Expect = 0.0
Identities = 846/925 (91%), Gaps = 23/925 (2%)
Strand=Plus/Plus
Query 130 AGAACTTTTCAAAGGACACCAAGAGTTGATACAGCTGGTTTCAATACCTTCTTGCCAAAG 189
|||||||||||||||||||||||||||||| | ||||| ||||| |||||||| |||
Sbjct 322 AGAACTTTTCAAAGGACACCAAGAGTTGATTTTG-GGGTTT-AATACTTTCTTGCCTAAG 379
Query 190 GGTTTTGAGATCACACTCCAACCCGAGGATGGACAACCTCCACTAAAGAAACGTGTTGAG 249
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 380 GGTTTTGAGATCACACTTCAACCTGAGGATGGACAACCTCCACTGAAGAAACGTGTTGAG 439
Query 250 TTCGAGGAAGCTATTAGTTTTGTTAACAAGACTAAGACAAGGTTTCAGGGCGATGATCGT 309
|| |||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||
Sbjct 440 TTTGAGGAAGCTATTAGCTTTGTTAACAAGATTAAGACAAGGTTTCAGGGAGATGATCGT 499
Query 310 GTATACATATCATTTTTAGACATTTTAGACATGTACAGAAATGATAGCAAGTCCATCACT 369
||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 500 GTATACAAATCATTTTTAGACATTTTAAACATGTACAGAAGGGATAGCAAGTCCATCACT 559
Query 370 GAGGTCTACCAGGAGGTTGCCATCCTTTTTCGAGATCATA-ACGATTTGCTTGTGGAATT 428
|||||||||||||||||||| ||||| ||||| |||||| | ||| |||| ||||| ||
Sbjct 560 GAGGTCTACCAGGAGGTTGCGATCCTATTTCGGGATCATTCA-GATCTGCTCGTGGAGTT 618
Query 429 TACTCACTTTCTACCTGATACTTCAGCAACAGCCTCTGTTC-ATTCTGTTAAAACTTCAG 487
|||||||||||||||||||||||||||||| |||||| ||| || |||||||||||||||
Sbjct 619 TACTCACTTTCTACCTGATACTTCAGCAACGGCCTCTATTCCAT-CTGTTAAAACTTCAG 677
Query 488 TTCTTGACAGAGGGATTTCTCTGCCTGATAAGAAGGACCAGAGCATTACTCCACATCGTG 547
||| ||| |||||| |||||||| ||||||||||||||| || |||||||||||||| ||
Sbjct 678 TTCGTGAGAGAGGGGTTTCTCTGGCTGATAAGAAGGACCGGATCATTACTCCACATCCTG 737
Query 548 ACCATGACTATGGTACTGAACATACTGACCTGGACCGAGAGAGACCTCTGAAGAAAGAAA 607
|||||||||||||||||||||||| ||||| |||||| ||||||||| | ||||||||||
Sbjct 738 ACCATGACTATGGTACTGAACATATTGACCAGGACCGGGAGAGACCTATTAAGAAAGAAA 797
Query 608 ATAAAGAACACATGAGAGGTAATACCAAAGAAAATGAGCATAGGGATGCCAGAGATTTCG 667
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 798 ATAAAGAACACATGAGAGGTACTAACAAAGAAAATGAGCATAGGGATGCCAGAGATTTCG 857
Query 668 AACCTCATAGCAAAAAAGAGCAATTTCTCAACAACAAGCAGAAACTACATATTAGAGGCG 727
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 858 AACCACATAGCAAAAAAGAGCAATTTCTCAACAAGAAGCAGAAACTACATATTAGAGGCG 917
Query 728 ATGATTCTGCTGAAATTTCCAATCAAAATAAATTTTCAGGAGCAGTTCCTAGTTCATCTA 787
||||| ||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||
Sbjct 918 ATGATCCTGCTGAAATTTCCAATCAAAGTAAACTTTCTGGAGCGGTTCCTAGTTCATCTA 977
Query 788 CTTATGATGAAAAAGGT----T-A-------CAGTCAAGATCTAGCTATTGTGGATAGAG 835
||||||||||||||||| | | ||||||||||||||||||||| |||||||
Sbjct 978 CTTATGATGAAAAAGGTGCCATGAAAAGTTACAGTCAAGATCTAGCTATTGTCGATAGAG 1037
Query 836 TAAAGGAAAAGCTTAATGCCTCCGAGTACCAGGAGTTTTTACGTTGCCTTAATCTCTTTT 895
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1038 TAAAGGAAAAGCTTAACGCCTCAGAGTACCAGGAGTTTTTACGTTGTCTTAATCTCTTTT 1097
Query 896 CAAAAGAAATAATCAGCCGACCAGAATTGCAATCTTTGGT-GGGAAATTTAATTGGAGTA 954
||||||| |||||||||||||||||| ||||||||||||| ||||| |||||| ||||||
Sbjct 1098 CAAAAGAGATAATCAGCCGACCAGAACTGCAATCTTTGGTAGGGAA-TTTAATCGGAGTA 1156
Query 955 TATCCTGACCTCATGGATTCCTTTATAGAGTTTTTGGTGCAATGCGAAAAGACTG--G-A 1011
|||||||||||||||||||||||||||||||||||||||||||| ||||||| || | |
Sbjct 1157 TATCCTGACCTCATGGATTCCTTTATAGAGTTTTTGGTGCAATGTGAAAAGAATGAAGGA 1216
Query 1012 CTGCTCTCTGGTATTCTGACTAAGA 1036
|||||||||||||||||||||||||
Sbjct 1217 CTGCTCTCTGGTATTCTGACTAAGA 1241
Score = 387 bits (209), Expect = 2e-106
Identities = 225/233 (97%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 1106 GTGAAGGCAAATATCCTCAACCGTCACTGGACAATGATAGAGACCAAGAACAGAAGAGAG 1165
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1266 GTGAAGGCAAATATCCTCAACCGTCACTGGACAATGATAGAGACCAGGAACATAAGAGAG 1325
Query 1166 ATGACGGGTTTAGAGACAGAGATCATGATAAGGAAAGGCTTGAAAAAGCAGCTGCAAATC 1225
|||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1326 ATGACGGGCTTAGAGATAGAGATCATGAAAAGGAAAGGCTTGAAAAAGCAGCTGCAAATC 1385
Query 1226 TGAAATGGGCAAAGCCGATTAGTGAACTAGATCTCTCGAACTGTGAACAATGCACTCCTA 1285
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TGAAATGGGCAAAGCCAATCAGTGAACTAGATCTCTCGAACTGTGAACAATGCACTCCTA 1445
Query 1286 GTTATCGGTTACTTCCAAAGAATTACCCTATTTCTATTGCAAGCCAGAAGACA 1338
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1446 GTTATCGGTTACTTCCAAAGAATTACCCAATTTCTATTGCAAGCCAGAAGACA 1498
Score = 193 bits (104), Expect = 6e-48
Identities = 188/223 (84%), Gaps = 28/223 (13%)
Strand=Plus/Plus
Query 1339 TCTCCGTCACATCAGGAAGTGAAGATTATTCATTTAGCCACATGCGCAAGAACCAGTATG 1398
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1533 TCTCCGTCACATCAGGAAGTGAAGATTATTCATTTAGCCACATGCGTAAGAACCAG--T- 1589
Query 1399 AATGAAGAGAGCCTCTTCAAATGTGAGGATGACCGGTTTGAGCTAGACATGCTATTAGA- 1457
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1590 -ATGAAGAGAGCCTCTTCAAATGTGAGGATGACAGGTTTGAGCTGGACATGCTATTAGAG 1648
Query 1458 ---G-----T-----------C-TGT-G-A-AATTATTGGCAAAGATTAACAGTAATGAA 1494
| | | ||| | | |||||||| |||| |||||||||||||||
Sbjct 1649 TCTGTAAATTCAACGACAAAGCATGTGGAAGAATTATTGACAAAAATTAACAGTAATGAA 1708
Query 1495 CTGAAAACCAACAGCCCCATCCATGTCGAGGATCACCTCACAG 1537
|||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1709 CTGAAAACCAACAGTCCCATCCGTGTCGAGGATCACCTCACAG 1751
> AT1G70060.1 | Symbols: SNL4 | SIN3-like 4 | chr1:26383244-26389916
FORWARD LENGTH=4483
Length=4483
Score = 337 bits (182), Expect = 3e-91
Identities = 322/387 (83%), Gaps = 20/387 (5%)
Strand=Plus/Plus
Query 130 AGAACTTTTCAAA-GGACACCA-AGAGTTGATACAGCTGGTTTCAATACCTTCTTGCCAA 187
||||||||| ||| ||| | || ||| ||||| | ||||| ||||| ||||| ||||
Sbjct 328 AGAACTTTTTAAAGGGA-A-CAGAGAATTGATTTTG-GGGTTT-AATACTTTCTTACCAA 383
Query 188 AGGGTTTTGAGATCACACTCCAACCCGAGGATGGA-CAA--C-CTCCACTAAAGAAACGT 243
||||||| ||||| || |||| |||||||||| || ||| | || ||| |||||| | |
Sbjct 384 AGGGTTTCGAGATAACTCTCCGACCCGAGGAT-GACCAACCCGCTGCACCAAAGAAGCCT 442
Query 244 GTTGAGTTCGAGGAAGCTATTAGTTTTGTTAACAAGACTAAGACAAGGTTTCAGGGCGAT 303
|||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 443 GTTGAGTTTGAGGAAGCTATTAGTTTTGTTAACAAGATTAAGACAAGGTTTCAAGGCGAT 502
Query 304 GATCGTGTATACATATCATTTTTAGACATTTTAGA-CATGTACAGAAATGATAGCAAGTC 362
||||||||||||| ||| |||||||||||||| || |||||| ||||| || | ||||||
Sbjct 503 GATCGTGTATACAAATCGTTTTTAGACATTTT-GAACATGTATAGAAAGGAAAACAAGTC 561
Query 363 CATCACTGAGGTCTACCAGGAGGTTGCCATCCTTTTTCGAGATCATAACGATTTGCTTGT 422
|| |||||||||||||| ||||| || ||||||||||| || ||| ||||||||||||
Sbjct 562 TATTACTGAGGTCTACCATGAGGTGGCTATCCTTTTTCGGGACCATCACGATTTGCTTG- 620
Query 423 G-GAATTTACTCACTTTCTACCTGATACTTCAGCAACAGCCTCTG-T--TCATTCTGTTA 478
| || || ||||||||||| ||||||||||||||||| || ||| | | ||||||| |
Sbjct 621 GAGAGTTCACTCACTTTCTCCCTGATACTTCAGCAACTGCATCTACTAATGATTCTGT-A 679
Query 479 AAACTTC-AGTTCTTGACAGAGGGATT 504
||| ||| ||| | ||| ||||| |||
Sbjct 680 AAAGTTCCAGTACGTGATAGAGGCATT 706
Score = 207 bits (112), Expect = 2e-52
Identities = 204/247 (83%), Gaps = 12/247 (5%)
Strand=Plus/Plus
Query 1094 AATCCTTGTGGAGTGAAGGCAAATATCCTCAA-C--C---GTCACTGGACAATGATAGAG 1147
|||||||||||||||||||||||| ||||||| | | |||||| ||||| |||| ||
Sbjct 1296 AATCCTTGTGGAGTGAAGGCAAATGTCCTCAACCTACTAAGTCACTTGACAAAGATACAG 1355
Query 1148 ACCAAGAACAGAAGAG-AGA-TGACGGGTTTAGAGACAGAGATCATGATAAGGAAAGGCT 1205
||| ||||| | ||| ||| ||| ||| |||||| ||||| | ||| ||||| |||||
Sbjct 1356 ACCGAGAAC-G-TGAGAAGATTGAAAGGTATAGAGAAAGAGACCGTGAGAAGGAGAGGCT 1413
Query 1206 TGAAAAAGCAGCTGCAAATCTGAAATGGGC-AAAGCCGATTAGTGAACTAGATCTCTCGA 1264
|||||| | || || | || ||||||||| ||| || || |||||||||||||||||||
Sbjct 1414 TGAAAAGGTGGCAGCGAGTCAGAAATGGGCTAAA-CCTATCAGTGAACTAGATCTCTCGA 1472
Query 1265 ACTGTGAACAATGCACTCCTAGTTATCGGTTACTTCCAAAGAATTACCCTATTTCTATTG 1324
|||||||||| ||||| |||||||||||| ||||||||||||||| || ||| |||| |
Sbjct 1473 ACTGTGAACAGTGCACACCTAGTTATCGGAGACTTCCAAAGAATTATCCAATTCCTATAG 1532
Query 1325 CAAGCCA 1331
|||||||
Sbjct 1533 CAAGCCA 1539
Score = 130 bits (70), Expect = 5e-29
Identities = 121/143 (85%), Gaps = 13/143 (9%)
Strand=Plus/Plus
Query 1 ATGGTTGGAGGAAGTAGTGCACAGAAGCTAACTACAAATG---CA-TA-C----CTTAAA 51
|||||||||||||||||||||||||||||||||||||||| || | | ||||||
Sbjct 155 ATGGTTGGAGGAAGTAGTGCACAGAAGCTAACTACAAATGATGCACTTGCATATCTTAAA 214
Query 52 GCTGTCAAGGATAAATTTCAGGATCAACGCGGA-AAATATGACGAGTTTCTTGAAGTCAT 110
|||||||||||||||||||| ||| |||| | | ||||| || ||||||||||| || ||
Sbjct 215 GCTGTCAAGGATAAATTTCAAGATAAACGTG-ACAAATACGATGAGTTTCTTGAGGTTAT 273
Query 111 GAA-GAATTTTAAATCTCAGAGA 132
||| || ||||||| ||||||||
Sbjct 274 GAAAGA-TTTTAAAGCTCAGAGA 295
> AT1G24200.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8571173-8572377 REVERSE LENGTH=591
Length=591
Score = 289 bits (156), Expect = 7e-77
Identities = 211/238 (89%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 218 ATGGACAACCTCCACTA-AAGAAACGTGTTGAGTTCGAGGAAGCTATTAGTTTTGTTAAC 276
||| ||||||| ||| | ||||||| ||| ||||| | |||||| ||||||||| |||||
Sbjct 251 ATGAACAACCTTCAC-AGAAGAAACCTGTCGAGTTAGGGGAAGCAATTAGTTTTATTAAC 309
Query 277 AAGACTAAGACAAGGTTTCAGGGCGATGATCGTGTATACATATCATTTTTAGACATTTTA 336
|||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 310 AAGATTAAGACAAGGTTTCAGGGCGATGATCGTGTATACAAATCAGTTTTAGACATTTTA 369
Query 337 GACATGTACAGAAATGATAGCAAGTCCATCACTGAGGTCTACCAGGAGGTTGCCATCCTT 396
||||||||||||| ||||| ||| ||||||| | |||||||| |||||||||||||||
Sbjct 370 AACATGTACAGAAAGGATAGGAAGCCCATCACCGCGGTCTACCGGGAGGTTGCCATCCTA 429
Query 397 TTTCGAGATCATAACGATTTGCTTGTGGAATTTACTCACTTTCTACCTGATACTTCAG 454
|||| |||||||||| ||||||||||||| |||||||||||||| |||| |||| |||
Sbjct 430 TTTCTAGATCATAACAATTTGCTTGTGGAGTTTACTCACTTTCTGCCTGCTACTCCAG 487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579896525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5