BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912175

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23130.1 | Symbols:  | Polyketide cyclase/dehydrase and lipi...   235    2e-61


> AT1G23130.1 | Symbols:  | Polyketide cyclase/dehydrase and lipid 
transport superfamily protein | chr1:8200383-8201235 FORWARD 
LENGTH=772
Length=772

 Score =  235 bits (127),  Expect = 2e-61
 Identities = 169/189 (89%), Gaps = 4/189 (2%)
 Strand=Plus/Plus

Query  105  GAAAGGGTTCAAGAGCTTCTTGATTACTGTCCAGGAAACCCCAAAGCTAAGAGGATCAGG  164
            ||||| |||||||||||||||| | ||| |||||| ||||||||||||||||||| | ||
Sbjct  348  GAAAGAGTTCAAGAGCTTCTTGGTCACTATCCAGGCAACCCCAAAGCTAAGAGGACCGGG  407

Query  165  AAGTGTGGTTAAGTGTCACTTCAAATATGAGAGGATTGACGAGGAGGTGGCTCATCCGGA  224
            ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||
Sbjct  408  AAGTGTGGTTAAGTGTCACTTAAAATATGAGAGGATTGACGAGAAGGTGGCTCCTCCGGA  467

Query  225  GAAGCTGCTCGCGTTGTTTGTCAAGGC-ATTC-AAAGACATGGACGAAATGCTTTTGTCC  282
            ||||||||||| |||||||| ||| || |  | ||  | |||||||||||||||||||||
Sbjct  468  GAAGCTGCTCGAGTTGTTTGCCAA-GCTAACCGAATCA-ATGGACGAAATGCTTTTGTCC  525

Query  283  GAAGTCTAG  291
            |||||||||
Sbjct  526  GAAGTCTAG  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5