BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912183
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23200.1 | Symbols: | Plant invertase/pectin methylesterase... 2471 0.0
> AT1G23200.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr1:8227178-8229582 FORWARD LENGTH=1905
Length=1905
Score = 2471 bits (1338), Expect = 0.0
Identities = 1562/1670 (94%), Gaps = 16/1670 (1%)
Strand=Plus/Plus
Query 1 ATGGATCACAAACTACTACTAACATTTCCCAAATGTGTATACACCAAATGTATCATAACC 60
|||||||||||| | ||||||||| |||||||| | |||||||||||||||||||||||
Sbjct 59 ATGGATCACAAAATCCTACTAACACCTCCCAAATCTTTATACACCAAATGTATCATAACC 118
Query 61 ATCATTTACGTCGTATCAATCTCTCATCTTAATGCCCATTTCATAACTTCATGCAAACAA 120
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 119 ATCATTTACGTCGTATCAATATCTCATCTAAATGCCCATTTCATAACTTCATGCAAACAA 178
Query 121 ACTCCATACCCTAGCGTCTGCGACCACCACATGTCGAATTCACCTCTCAAAACTTTAGAC 180
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 ACCCCATACCCTAGCGTCTGCGACCACCACATGTCTAATTCACCTCTCAAAACTTTAGAC 238
Query 181 GACCAAACCGATGGATTCACTTTCCACGACCTTGTGGTCAGCTCCACCATGGACCATGCC 240
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 GACCAAACGGATGGGTTCACTTTCCACGACCTTGTGGTCAGCTCCACCATGGACCAGGCC 298
Query 241 GTGCAACTACACCGCCTCGTCTCTACCGTGAAACAGCGTCATTCTCTCCACAAACATGCA 300
||||||||||||||||| |||||| || ||||||||| |||||||||||||||||| |||
Sbjct 299 GTGCAACTACACCGCCTTGTCTCTTCCTTGAAACAGCATCATTCTCTCCACAAACACGCA 358
Query 301 AGGTCAGCTTTGTTTGACTGCTTGGAGCTCTACGAAGACACTATAGACCAACTCAACCAC 360
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACATCAGCTTTGTTTGACTGCTTGGAGCTCTACGAAGACACTATAGACCAACTCAACCAC 418
Query 361 TCTAGGAGATCGTACGGTCTATATTCTTCGCCGCATGATAGACAAACCGCGTTAAGCGCA 420
||| ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 419 TCTCGGAGATCGTACGGTCAATATTCTTCGCCACATGATAGACAAACCTCGTTAAGCGCG 478
Query 421 GCCATAGCTAATCAAGACACTTGCAGAAACGGATTTAAAGATTTTAACTTAACCTCTTCG 480
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 479 GCCATAGCTAATCAAGACACTTGCAGAAACGGATTTAGAGATTTTAAGTTAACCTCTTCG 538
Query 481 TATTCAAAGTATTTCCCAGTACAAATTCACCGGAATCTCACTAAGTCT-TTAAGCAACTC 539
||||||||||||||||| |||||| ||||| ||||||||||||||||| || ||||||||
Sbjct 539 TATTCAAAGTATTTCCCGGTACAATTTCACAGGAATCTCACTAAGTCTATT-AGCAACTC 597
Query 540 TTTGGCAGTTACTAA-G--GCTGC---GGCCGAGGCGGTTGCCGAGAAATATCCATCGAC 593
||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||||
Sbjct 598 TTTGGCAGTTACTAAGGCTGCTGCTGAGGCTGAGGCGGTTGCCGAGAAATATCCATCGAC 657
Query 594 GGGGTTCACTAAATTCAGTAAACAAAGAAGTAGCGGTGGAGGTGGTGGCCGTCGGAGATT 653
|||||||||||||||||| |||||||||||||| | ||||||||| ||| ||||||||
Sbjct 658 GGGGTTCACTAAATTCAGCAAACAAAGAAGTAGTGCCGGAGGTGGTAGCCACCGGAGATT 717
Query 654 ATTGATGTTTTCCGACGATACGTTTCCATCGTGGTTCCCTCTTTCCGACCGTAAACTACT 713
|||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATTGTTGTTTTCCGACGAGAAATTTCCATCGTGGTTCCCTCTTTCCGACCGTAAACTACT 777
Query 714 GGAAGATTCCGAAACTACGGTGAAAGCCGATCTTGTGGTGGCTAAAGACGGTTCGGGTCA 773
|||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 778 GGAAGATTCCAAAACTACGGCAAAAGCCGATCTTGTGGTGGCTAAGGACGGTTCGGGTCA 837
Query 774 TTACACAAGCATTCAACAAGCGGTAAACGCAGCAGCCAAACTTCCTCGGAGAAA-CACTA 832
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 838 CTACACAAGCATTCAACAAGCGGTAAACGCAGCTGCCAAACTTCCTCGGAGAAACCA-GA 896
Query 833 GACTTGTGATATACGTTAAAGCCGGCGTTTACAAAGAAAACGTGGTGATCAAGAAATCGA 892
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 897 GACTTGTGATATACGTTAAAGCCGGCGTTTACAGAGAAAACGTGGTAATCAAGAAATCGA 956
Query 893 TCAAGAACGTGATGGTTATCGGAGACGGCATTGATTCTACCATCGTCACTGGTAATAAGA 952
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||
Sbjct 957 TCAAGAACGTGATGGTTATCGGAGATGGCATCGATTCTACCATCGTCACCGGTAATAGGA 1016
Query 953 ACGTTAAAGATGGCACGACGACGTTTCGGTCCGCAACTTTTGCTGTTTCCGGCAGCGGTT 1012
||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1017 ACGTTCAAGATGGCACGACGACGTTTAGGTCCGCAACTTTTGCTGTTTCCGGCAACGGTT 1076
Query 1013 TTATCGCACGAGGCATAACATTCGAGAACACGGCAGGACCGGAGAAACATCAGGCGGTCG 1072
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1077 TTATCGCACAAGGCATAACATTCGAGAACACGGCAGGACCGGAGAAACATCAGGCGGTGG 1136
Query 1073 CTCTCCGATCAGGTTCAGACTTCTCCGTCTTCTACGACTGCTCTTTCAAAGGCTATCAAG 1132
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1137 CTCTCCGATCAAGTTCAGACTTCTCCGTCTTCTACGCCTGCTCTTTCAAAGGCTATCAAG 1196
Query 1133 ACACTCTCTACCTTCATTCTCGCCGTCAGTTCTTGAGAAACTGTAACATCTACGGCACCG 1192
|||||||||||||||||||| | |||||||||||||||||||| || || ||||| ||||
Sbjct 1197 ACACTCTCTACCTTCATTCTAGTCGTCAGTTCTTGAGAAACTGCAATATTTACGGAACCG 1256
Query 1193 TTGATTTCATCTTCGGAGACGCAACCGCCATCCTCCAAAACTGTAACATCTACGCTCGTA 1252
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TCGATTTCATCTTCGGAGACGCAACCGCCATCCTCCAAAACTGTAACATCTACGCTCGTA 1316
Query 1253 AGCCGATGAGCGGCCAGAAAAACACGATCACCGCCCAATCACGCAAAGA-CCCGAACGAG 1311
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 1317 AGCCGATGAGCGGCCAGAAAAACACGATCACCGCTCAATCACGCAAAGAACCCGA-CGAG 1375
Query 1312 AAC-ACTGGCTTCGTCGTCCAGAGCTCGACGGTGGCTACGGCCTCGGAGACTTATTTAGG 1370
| | |||||||||||| |||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1376 A-CTACTGGCTTCGTCATCCAGAGCTCGACGGTGGCTACTGCGTCGGAAACTTATTTAGG 1434
Query 1371 ACGGCCGTGGAAATCGTATTCGAGGACGGTTTTCATGAAATGTAATCTCGGAGCGTTGGT 1430
||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1435 ACGGCCGTGGAGATCGCATTCGAGGACGGTTTTCATGAAATGTAATCTTGGAGCGTTGGT 1494
Query 1431 TAATCCGGCGGGGTGGTTGCCTTGGAACGGCGAGTTT-GCTCTGAGTACTCTTTATTACG 1489
| ||||||||| ||||||||||||| || ||||| ||||| || |||||||||||||
Sbjct 1495 GAGTCCGGCGGGATGGTTGCCTTGGAGTGGT-AGTTTTGCTCTTAGCACTCTTTATTACG 1553
Query 1490 GTGAGTATGGTAATACCGGCGCCGGAGCAAGTGTCTCCGGTAGAGTTAAATGGCCGGGTT 1549
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1554 GTGAGTATGGTAATACCGGCGCCGGAGCAAGTGTCTCCGGTAGAGTTAAGTGGCCAGGTT 1613
Query 1550 ATCATGTTTTAAAGACGGTGACAGAGGCGGGGAAATTCACGGTGGAGAATTTCTTGGACG 1609
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1614 ATCATGTTATAAAGACGGTGACAGAGGCGGAAAAATTCACGGTGGAGAATTTCTTGGACG 1673
Query 1610 GAAACTATTGGATTACGGCGGCGGGAGTACCGGTCAACGATGGACTTTGA 1659
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1674 GAAACTATTGGATTACGGCTACGGGAGTACCGGTCAACGATGGACTTTGA 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81977489985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5