BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912186

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G62290.1 | Symbols:  | nucleotide-sensitive chloride conduct...   246    5e-65


> AT5G62290.1 | Symbols:  | nucleotide-sensitive chloride conductance 
regulator (ICln) family protein | chr5:25019487-25021131 
FORWARD LENGTH=930
Length=930

 Score =  246 bits (133),  Expect = 5e-65
 Identities = 151/159 (95%), Gaps = 3/159 (2%)
 Strand=Plus/Plus

Query  21   AGAAGAAGAAGAAGAAAGCGGACATAATTGGGTGTTTAGTGCTGATCAGATGGATGTTCG  80
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  540  AGAAGAAGAAGAAGAAAGCGGACATAATTGGGTGTTTAGTGCTGATCAGATGGATGTTCG  599

Query  81   TGGAGGAGCACATGAAGATGCAGAATGGCAAATATCTCAGAGTCCGACAAGTGTAATTGG  140
            |||||||| |  ||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct  600  TGGAGGAG-A--TGATGATGCAGAGTGGCAAATATCTCAGAGTCCGACTAGTGTAATTGG  656

Query  141  TCATTCCAATGGAGATGAAGGTCTTGCTCAGCCTATGCT  179
            |||||||||||||||||||||||||  ||||||||||||
Sbjct  657  TCATTCCAATGGAGATGAAGGTCTTAATCAGCCTATGCT  695



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9104544531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5