BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912200
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23300.1 | Symbols: | MATE efflux family protein | chr1:826... 1229 0.0
> AT1G23300.1 | Symbols: | MATE efflux family protein | chr1:8263827-8266048
REVERSE LENGTH=1548
Length=1548
Score = 1229 bits (665), Expect = 0.0
Identities = 922/1041 (89%), Gaps = 37/1041 (4%)
Strand=Plus/Plus
Query 255 GCTCTTTGCTTACGCTGTCAACTACTTCGCCACCGCCAAGTTCTTGCAGGCACAAAGCAA 314
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 522 GCTCTTTGCTTACGCTGT-TA--ACTTCGCCACCGCCAAGTTCTTGCAGGCACAAAGCAA 578
Query 315 GGTGATTGCAATGGCGGTTATAGCAGTGACCGTGCTGTTACAGCACACTCTGTTGAGTTG 374
|||||||| |||||||||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 579 AGTGATTGCGATGGCGGTTATAGCAGCGACTGTGCTGTTACAGCACACTCTATTGAGTTG 638
Query 375 GTTTCTGATGCTGAAACTCGGATGGGGAATGGCCGGAGGAGCTGTTGTATTGAATGTGTC 434
||| |||||||||||||| |||||||||||||||||||||| |||||||||||| ||||
Sbjct 639 GTTGCTGATGCTGAAACTTAGATGGGGAATGGCCGGAGGAGCCGTTGTATTGAATATGTC 698
Query 435 GTGGTGGTTAATAGATGTTGCTCAAATAGTATATATTTGTGGTGGTTCTTGTGGCAGAGC 494
||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||
Sbjct 699 GTGGTGGTTAATAGATGTTACTCAAATAGTTTATATTTGTGGTGGTTCTTCTGGCAGAGC 758
Query 495 TTGGTCAGGGCTCTCATGGAAGGCTTTCAAGAATATTCTCAGAGGCTTTGCAAGATTGTC 554
||||||||||||||| |||| ||| |||||| | | ||||||||||||||||||||||||
Sbjct 759 TTGGTCAGGGCTCTCTTGGATGGCGTTCAAG-A-A-TCTCAGAGGCTTTGCAAGATTGTC 815
Query 555 TCTTGCCTCTGCAGTCATGGTTTGCCCAGAGGTTTGGTATTTGAAGGCGTTGATTCTGTT 614
|||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 816 TCTTGCCTCTGCAGTCATGGTTTGCCTAGAGGTTTGGTATTTCATGGCGTTGATTCTGTT 875
Query 615 TGCGGGTTACCTCAAGAACCCTCAAGTCTCTGTGGCTGCTCTTTCCATTTGCATGAACAA 674
||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 876 TGCGGGTTACCTCAAGAACCCTCAAGTCTCTGTAGCTGCTCTTTCGATATGCATGAACAT 935
Query 675 ATTGGGATGGCCGATCATGGTGGCCTTTGGCTTCAATGCAGCTGTGAGTGTAAGAGTGTC 734
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 936 ATTGGGATGGCCGATCATGGTGGCCTTTGGCTTCAATGCGGCTGTGAGTGTAAGAGAGTC 995
Query 735 AAACGAGCTTGGAGCTGAACACCCAAGAAGGGCGAAA-TTCTTGTTGATAGTGGCAATGA 793
|| ||||| |||||||||||||||||||| || ||| ||||| ||||||||||| ||||
Sbjct 996 GAATGAGCTAGGAGCTGAACACCCAAGAAGAGC-AAAGTTCTTATTGATAGTGGCTATGA 1054
Query 794 TAACTTCTGTATCAATTGGAGCTATGATATCAATGACTCTCATCGTGGTACGAGACAAGT 853
||||||||||||| || ||| | |||||||| |||||||||| ||| | ||||||||||
Sbjct 1055 TAACTTCTGTATCGATCGGAATTGTGATATCAGTGACTCTCATTGTGTTGCGAGACAAGT 1114
Query 854 ATCCAGAAATTTTCTCTGATGATGAAGAAGTGAGAGGACACGTGAAGCAGCTGATTCCAA 913
|||||| ||| ||||| ||||||||||||||||||| || |||||||||||||| |||
Sbjct 1115 ATCCAGCAATGTTCTCAGATGATGAAGAAGTGAGAGTACTCGTGAAGCAGCTGACTCCGT 1174
Query 914 AGCTGGCTCTCACAATCGTCATCAACAACATTCAGCCTGTTCTTTCTGGTGTCGCAGTTG 973
|||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1175 TGCTGGCTCTCACCATCGTCATCAACAACATTCAGCCTGTTCTTTCTGGTGTAGCTGTTG 1234
Query 974 GAGCTGGATGGCAAGGGATCGTTGCTTATGTGAACGTTGGGTGTTACTATTTATGTGGTA 1033
|||||||||||||||| || ||||| ||||||||| |||||||||||||| |||||||||
Sbjct 1235 GAGCTGGATGGCAAGGCATTGTTGCATATGTGAACATTGGGTGTTACTATCTATGTGGTA 1294
Query 1034 TAACTA-CTGGTCTAGTGCTCGGCTACAAGATGGAACTTGGAGTAAAGGTAAGGGATATG 1092
|| | | | ||||| ||||||||||||||||||||||||||||| |||| || |||||
Sbjct 1295 TACCAATC-GGTCTTGTGCTCGGCTACAAGATGGAACTTGGAGTGAAGG---GG-ATATG 1349
Query 1093 GACAGGAATGCTAACAGGA-CA-T-GT----------GTTCTACTTTTGATAATCTATAG 1139
||||||||||||||| ||| || | || ||||||||||| || ||||||||
Sbjct 1350 GACAGGAATGCTAACGGGAACAGTAGTTCAAACATCTGTTCTACTTTTCATTATCTATAG 1409
Query 1140 AACCAACTGGAACAGAGAGGCTTCATTAGCAGAAGCTAGAATAAGGAAATGGAGGGG-CC 1198
|||||||||||| | ||||||||||||||||||||||||||||| |||||| || | ||
Sbjct 1410 AACCAACTGGAAGAAAGAGGCTTCATTAGCAGAAGCTAGAATAAAAAAATGG-GGAGACC 1468
Query 1199 AAACAGATATAGGAGAAGAGATTGAAGAGATCAAATGTGAAGAAGATGACA-CTATTCAA 1257
|| || | | | |||||||||| || || |||||||||||||| | | ||||||
Sbjct 1469 AATCAAACAAAAGAGAAGAGATCGATC---TC---TGTGAAGAAGATGAAAACAATTCAA 1522
Query 1258 AATGGTGAATACAATCAAAGG 1278
| ||||||| ||||||| |||
Sbjct 1523 A-TGGTGAAAACAATCACAGG 1542
Score = 226 bits (122), Expect = 5e-58
Identities = 154/168 (92%), Gaps = 7/168 (4%)
Strand=Plus/Plus
Query 97 GTCAAAGAAGCTGTGGTGGCTCGCGGGTCCTGCGATATTCACATCTTTCTGCCAATA--- 153
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 132 GTCAAAGAAGTTGTGGTGGCTCGCTGGTCCTGCGATATTCACATCTTTCTGCCAATACTC 191
Query 154 -C-T--CGCCGTCACTCAGATCCTCGCCGGACACGTCAACACGCTGGCTCTAGCTGCCGT 209
| | ||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 192 TCTTGGCGCCGTCACGCAGATCCTCGCCGGACACGTCAACACGCTGGCTTTAGCTGCTGT 251
Query 210 CTCCATACAGAACTCCGTCATCCCCGGCTTCTCTGTCGGCCTTATGCT 257
|||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 252 CTCCATACAGAACTCCGTCATCTCCGGCTTCTCTGTCGGCATTATGCT 299
Score = 158 bits (85), Expect = 2e-37
Identities = 93/97 (96%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 1 ATGGAAACTCTCAACGTTGATCATGAAGATACTATCTCCTCAGAACAAGAACATCAAACA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||
Sbjct 1 ATGGAAACTCTCAACGTTGATCATGAAGATACTATTTCCTCAGAACAAGAACATCGAGCA 60
Query 61 CATACCACATCCGACACCGACATGCCTCCGATCTCCG 97
||||||| |||||||||||||||||||||||||||||
Sbjct 61 CATACCAAATCCGACACCGACATGCCTCCGATCTCCG 97
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66616123215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5