BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912213
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23440.1 | Symbols: | Peptidase C15, pyroglutamyl peptidase... 1070 0.0
> AT1G23440.1 | Symbols: | Peptidase C15, pyroglutamyl peptidase
I-like | chr1:8321680-8324240 FORWARD LENGTH=1016
Length=1016
Score = 1070 bits (579), Expect = 0.0
Identities = 629/654 (96%), Gaps = 0/654 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTCTGAAGGACCAAAAGCAATAACGATTCATGTTACTGGTTTCAAGAAATTTCTT 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 142 ATGGGTTCTGAAGGACCAAAAGCAATAACGATTCATGTGACTGGTTTCAAGAAATTTCTT 201
Query 61 GGGGTTTCTGAGAATCCTACTGAGAAAATAGCTACTAATCTGAAATCTTATGTGGAGAAG 120
|||||||| ||||||||||||||||| ||||||| | | ||||||| |||||||||||
Sbjct 202 GGGGTTTCAGAGAATCCTACTGAGAAGATAGCTAATGGTTTGAAATCGTATGTGGAGAAA 261
Query 121 CGAGGATTGCCTTCTGGGTTGTGTCTTGGTAGCTGCAGTGTTCTTGATACTGCAGGGGAT 180
||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 262 CGAGGTTTGCCTTCTGGATTGTGTCTTGGTAGCTGTAGTGTTCTTGACACTGCTGGGGAA 321
Query 181 GGTGCAAAGTCTAAGCTTTATGAGGTTTTGGAGTCTAGTGTTGTGTCTGGAGATAAGAAC 240
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 322 GGTGCAAAATCTAAGCTTTATGAGGTTTTGGAGTCTAGTGTTGTCTCTGGAGATAAGAAC 381
Query 241 AACAATGGAACTGTTGTCTGGCTTCATCTCGGGGTGAATAGTGGAGCGACAAAATTCGCC 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 382 AACAATGGAACTGTTGTCTGGCTTCATCTCGGGGTGAATAGCGGAGCGACAAAATTCGCC 441
Query 301 ATTGAAAGACAGGCAGTGAACGAAGCTCATTTCCGTTGTCCTGATGAATTGGGCTGGCAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 ATTGAAAGACAGGCAGTGAACGAAGCTCATTTCCGTTGTCCTGATGAATTGGGCTGGCAA 501
Query 361 CCACAGCGGCTTCCCATAGTTGTTGAAGATGGAAGCATTTCAAAGGCAAAAGAGACTTCG 420
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 502 CCGCAGCGGCTTCCCATAGTTGTTGAAGATGGAGGCATTTCAAAGGCAAAAGAGACTTCA 561
Query 421 TGCTCGACGGAGTCCATTTTCCAGTTATTAAAGAAGAAAGGCTTCGAGGTAGTTCAATCA 480
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 562 TGCTCGACGGAGTCCATTTTCCAGTTATTAAAGAAGAAAGGCTTTGAGGTTGTTCAATCA 621
Query 481 GACGATGCTGGACGTTTTGTATGCAACTACGTGTACTATCACTCTCTAAGGTTCGCAGAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GACGATGCTGGACGTTTTGTATGCAACTACGTGTACTATCACTCTCTAAGGTTCGCAGAG 681
Query 541 CAAAAGGGACACAAGTCTCTGTTCGTTCACGTTCCTCTCTTCTCCAAAATCGATGAAGAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 CAAAAGGGACACAAGTCTCTGTTCGTTCACGTTCCTCTCTTCTCCAAAATCGATGAAGAT 741
Query 601 ACTCAAATGCAGTTCGTGGCCTCACTCTTGGAAGCAATTGCAGCTACTTGCTAG 654
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 742 ACTCAAATGCAGTTCGTGGCTTCACTCTTGGAGGCAATTGCAGCTACTTGCTAG 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5