BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912222
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23550.1 | Symbols: SRO2 | similar to RCD one 2 | chr1:83507... 1280 0.0
> AT1G23550.1 | Symbols: SRO2 | similar to RCD one 2 | chr1:8350793-8352791
FORWARD LENGTH=1351
Length=1351
Score = 1280 bits (693), Expect = 0.0
Identities = 884/974 (91%), Gaps = 22/974 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGCGCAGGTCGAAATTGAGGACCAAGCGTCTGTCACCAACCTTGATAATGGCGAA 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 120 ATGGCGGCGCAGGTCGAAATTGAGGACCAAACGTCCGTCACCAACCTTGATAATGGCGAA 179
Query 61 ATCTTCGATTCACTCTCCGACGATGCTGATTCTTCTTCTTTCT----CC--A-----AAA 109
|| ||||||||| |||||||||||||||||||||| | ||||| || |
Sbjct 180 ATATTCGATTCAATCTCCGACGATGCTGATTCTTC-TGTTTCTCACGCCGGATCTTCTTT 238
Query 110 C-C-GACTC-T--CTGATTCTTCTCGGTGAAGGAAACCCAGAGCACGATGTTATCAAGAC 164
| | ||| | ||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 239 CTCTTCCTCTTCACTGATCCTTCTCGGCGAAGGAAACCCAGAGCACGACGTTATCAAGAC 298
Query 165 GTGTTTACTCTCTGGAATGGGTGTTGTATCTAGCGACACGACGATCGTGACGATTCGTAA 224
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct 299 GTGTTTACTCTCGGGAATGGGTGTTGTTTCTAGCGACACGACGATCGTTACGATTAGTAA 358
Query 225 AAACTCATCGG-A--AGGAATCACGACGAGAGCTAAGTTTCTT-TCGTTTAGGATTTTCA 280
|||||| |||| | |||||||||||||||||| |||||| || |||||||||||||||
Sbjct 359 AAACTCTTCGGAACGAGGAATCACGACGAGAGCCAAGTTT-TTGGCGTTTAGGATTTTCA 417
Query 281 CTGACGCTGTGGCGAGGAAACACGGCGGAGATGCGAATGTTAAATATGGTTGGTACGCTG 340
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 418 CTGACGCTGTTGCGAGGAAACACGGCGGAGATGCTAATGTGAAATATGGTTGGTACGCTG 477
Query 341 GTTCTAAACCGGAGATTCAAAGTATCATCTCTTACGGATTTAGTAATCGTGATGTTGGAA 400
|||||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 478 GTTCTAGAGATGAGATTCAAAGAATCATCTCTTACGGATTTAGCAATCGTGATGTTGGAA 537
Query 401 AATTCGAGAATGATGGTTGTTCTCATGGAATTGGAATCCATTTGGTTCCTTCTAAGTGTT 460
|||| || ||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 538 AATTTGAAAATGATGGTGGTTCTCATGGAATTGGAATCCATTTGGTTCCTTCCAAGTGTT 597
Query 461 CTCTTCTTGCGGCTTCAGCTACAGAGCCAGATGAGGAAGGTTTAAGATATCTTCTCTTAT 520
|||| |||||||||||||||||||||| |||||| ||||||||| |||||||||| ||||
Sbjct 598 CTCTACTTGCGGCTTCAGCTACAGAGCAAGATGAAGAAGGTTTACGATATCTTCTGTTAT 657
Query 521 GCCGTTTGATCTTGGGGAAACCTGAGTTAATCATCTCAGGCTCTAAGCAATCGTATCCGA 580
||||| | ||||| |||||||||||| |||||||||| |||||||| |||||||||||||
Sbjct 658 GCCGTGTAATCTTAGGGAAACCTGAGATAATCATCTCCGGCTCTAAACAATCGTATCCGA 717
Query 581 GCTCAGCTGAGTTTGATTCTGGTGTGGATGATCTACACAATCCTAGAAACTATGTCATAT 640
| || ||||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 718 GTTCTGCTGAGTTTGATTCTGGTGTGGATGATTTACACAATCCTAGAAACTATGTGATTT 777
Query 641 GGAGTTGTAACATGAATTCGTTTATACTTCCGAGTTATATCGTCAGTTTTAGGTCTCCTC 700
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 778 GGAGTTGTAACATGAATTCGTGTATTCTTCCGAGTTATATCGTCAGTTTTAGGTCTCCTA 837
Query 701 GTCTTAGAGTAAGTAGAGGTGGTTTTGCTGCAAGACCAAGCTCGCCGTGGGTTAGTTTTG 760
| || ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 838 GACTGAGAGTGAGTAGAGGTGGTTTTGCTTCGAGACCAAGCTCGCCGTGGGTTAGTTTTG 897
Query 761 CCGCCTTGATGTCAATGTTGTCTAAATCAATGGATCCTTCAAGAATGAACTTGATCATCC 820
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 898 CTTCCTTGATGTCAATGTTGTCTACATCAATGGATCCTTCAAGAATGAACTTGATCATCC 957
Query 821 GAACTTACGATGATTTTCGGAAACGGAAGATCAGGAGAGACCAATTGGTTAGGAAGATGA 880
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 958 GAACTTACGATGATTTTCGGAAACGGAAGATTAGGAGAGACCAATTGGTAAGGAAGATGA 1017
Query 881 GAGAAGTGGCTGGAGACAATCTTTTGGCTGAGATAATCAAGAATCACAGAGACAAAAACA 940
|||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||
Sbjct 1018 GAGAAGTGGCTGGAGATAATCTTTTGGCTGAGATAATCAAGAATCACAAAAACAGAAACA 1077
Query 941 AGATCAAGAATTAA 954
|| ||| |||||||
Sbjct 1078 AGGTCACGAATTAA 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5