BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912235

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23750.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   688    0.0  


> AT1G23750.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr1:8400151-8401487 FORWARD LENGTH=843
Length=843

 Score =  688 bits (372),  Expect = 0.0
 Identities = 400/414 (97%), Gaps = 0/414 (0%)
 Strand=Plus/Plus

Query  1    ATGGCAGATACCGCCAAAGCCGGGTTGAAGAAGCCAGCTTTCACTAAGGTCGATCAGCTG  60
            ||||||||| || ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  114  ATGGCAGATTCCACCAAAGCAGGGTTGAAGAAGCCAGCTTTCACTAAGGTTGATCAGCTG  173

Query  61   CGTCCTGGGACTAGCGGACACAATGTCAATGTGAAGATCGTTAGCACGAAGATGGTGTTA  120
            |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct  174  CGTCCTGGGACTAGCGGACACAATGTCAATGTGAAGATTGTCAGCACGAAAATGGTGTTA  233

Query  121  CAGAAAGGTCGTGCTGATGGTCCTCAGGCTCGCCAGTTGCGGATTTCTGAATGTATTGTT  180
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  234  CAGAAAGGTCGTGCTGATGGTCCTCAAGCTCGCCAGTTGCGGATTTCTGAATGCATTGTT  293

Query  181  GGAGACGAGACAGGAGTTATCGTCTTTACCGCAAGAAATGACCAAGTGGACTTAATGAAA  240
            || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  GGTGACGAGACAGGAGTGATCGTCTTTACCGCAAGAAATGACCAAGTGGACTTAATGAAA  353

Query  241  GAGGGATCAACTGTAACTCTACGCAATGCGAAAATCGACATGTATAAAGGATCAATGAGG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  GAGGGATCAACTGTAACTCTACGCAATGCGAAAATCGACATGTATAAAGGATCAATGAGG  413

Query  301  CTAGCTGTGGATAAGTGGGGTCGTGTTGAAGTCACAGAGCCTGCGAGCTTCAAAGTGAAA  360
            |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  414  CTAGCTGTAGACAAGTGGGGTCGTGTTGAAGTCACAGAGCCTGCGAGCTTCAAAGTGAAA  473

Query  361  GAAGACACCAACATGTCCCTTATCGAGTATGAGCTCGTAAATGTCGTTGAATGA  414
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  474  GAAGACACCAACATGTCCCTTATCGAGTATGAGCTCGTAAACGTCGTTGAATGA  527



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5