BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912257
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23965.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 359 7e-99
> AT1G23965.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G70270.1);
Has 30 Blast hits to 30 proteins in 8 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8480422-8481486
REVERSE LENGTH=1065
Length=1065
Score = 359 bits (194), Expect = 7e-99
Identities = 209/216 (97%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 31 GAGAGGAATAGGATGCAGACGAAGAAGAAAACGGGTCGTGGGTCAGGATCCGGGTCGATC 90
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GAGAGCAA-AGGAAGCAGACGAAGAAGAAAACGGGTCGTGGGTCAGGATCCGGGTCGATC 761
Query 91 CAGATAAAGATGAGGAAGCTCCGAGTGCTTATACCGGGTGGGCGAAGATTGAACCAACCG 150
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CAGATAAAGATGAGGAAACTCCGAGTGCTTATACCGGGTGGGCGAAGATTGAACCAACCG 821
Query 151 GATCTGCTTCTATCAAAGACTGCTGATTATATTATGCATTTGGAGTTGAGGATTAGGTTT 210
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GATCTGCTTCTAACAAAGACTGCTGATTATATTATGCATTTGGAGTTGAGGATTAGGTTT 881
Query 211 CTCAAAGCCCTCTCCAATATCTACTCACTCTCTTAA 246
||||||||| ||||| ||||||||||||||||||||
Sbjct 882 CTCAAAGCCATCTCCGATATCTACTCACTCTCTTAA 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11159440278
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5