BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912263
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24050.1 | Symbols: | RNA-processing, Lsm domain | chr1:850... 939 0.0
> AT1G24050.1 | Symbols: | RNA-processing, Lsm domain | chr1:8507010-8508864
FORWARD LENGTH=1039
Length=1039
Score = 939 bits (508), Expect = 0.0
Identities = 551/571 (96%), Gaps = 5/571 (1%)
Strand=Plus/Plus
Query 1 ATGGATCCAGCAGGAGGAGCATCGGTGGCCAGCG-ATATTGGAGGAGAAGGAGAGAAATT 59
||||||||||| |||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 48 ATGGATCCAGC---AGGAGCATCGGTGGCCAGCGCA-ATCGGAGGAGAAGGAGAGAAATT 103
Query 60 CACGGTGGGGAATATTTATTCAGTGAAGGTGATCACCGGAGATGAGTTCCGAGGGATCGT 119
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 104 CGCGGTGGGGAATATTTATTCAGTGAAGGTGATCACCGGAGATGAGTTCAGAGGGATCGT 163
Query 120 CATGGCTTACGACCCCATCCCCAACTTCGTCTTTTTTGAAGAAGGAACAAAACCTAGACC 179
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 164 CATGGCTTACGACCCCATCCCCAACTTCGTCTTTTTTGAAGAGGGTACAAAACCTAGACC 223
Query 180 CGGGCATTCGAAGAACACTCGGATGGTGAATGCGAATTTTATTACAGGGCTTTCGTATTT 239
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 224 TGGGCATTTGAAGAACACTCGGATGGTGAATGCGAGTTTTATTACAGGGCTTTCGTATTT 283
Query 240 AGGCAAAACCGAAGATCCACTTGATACAGACAACTTTTCTGTTGATCTTAATAGTCTCCG 299
||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 284 AGGCAAAACTGAAGATCCACTTGATTCAGACAACTTTTCTGTTGATCTTAATGGTCTCCG 343
Query 300 AGCTAAAGAGGCACTTGCTATCAGGCAAGCGGAAGCAGATGCTGAGAGAATGGGAGTTGG 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 344 AGCTAAAGAGGCACTTGCTATCAGGCAAGCGGAAGCAGATGCTGAAAGAATGGGAGTTGG 403
Query 360 TGTTACCGCTGAGGCCCAGAGCATCTTCGACGCGTTGTCTAAGACGCTTCCTGTGCAATG 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TGTTACCGCTGAGGCTCAGAGCATCTTCGACGCGTTGTCTAAGACGCTTCCTGTGCAATG 463
Query 420 GGAAAACTCAGACATTCTGGTGATGAAAGAGGTACGCGTTCGTAGCCCGTATCTTTCAGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GGAAAACTCAGACATTCTGGTGATGAAAGAGGTACGCGTTCGTAGCCCGTATCTTTCAGA 523
Query 480 TTGTGTCTTTGGAGGAACTGATGCTGCCAACAACCGAGTCAAGAAAGTGCTTGAGCTGGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TTGTGTCTTTGGAGGAACTGATGCTGCCAACAACCGAGTCAAGAAAGTGCTTGAGCTGGA 583
Query 540 GAGACGGAGGTTGCAACTCTTTGGCACATGA 570
||||| ||||||||||||||||||||||||
Sbjct 584 AAGACGAAGGTTGCAACTCTTTGGCACATGA 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27377610115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5