BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912284
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24200.1 | Symbols: | Paired amphipathic helix (PAH2) super... 361 5e-99
> AT1G24200.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8571173-8572377 REVERSE LENGTH=591
Length=591
Score = 361 bits (195), Expect = 5e-99
Identities = 413/511 (81%), Gaps = 44/511 (9%)
Strand=Plus/Plus
Query 1 ATGGTTGGAGATGGAGGTGCACACAAGCCTACTACAAATGTCGCGTTTGAATACCTTAAA 60
||||||||||| ||||| |||||||||||||||||||||| |||| || ||||||||| |
Sbjct 1 ATGGTTGGAGAAGGAGGCGCACACAAGCCTACTACAAATGACGCGCTTAAATACCTTAGA 60
Query 61 GCCGTGAAGGCTAAATTTC-AGGATCAACATGAAAAATATGACGAATTTCTTGAGATCTT 119
||||||||||||||||||| ||| ||||| ||||||||||||||| |||||| ||||| |
Sbjct 61 GCCGTGAAGGCTAAATTTCAAGG-TCAACGTGAAAAATATGACGAGTTTCTTCAGATCAT 119
Query 120 GAAT-GATTTTAAATGTCGGAGAGTTGATAGACT-TGATGTCATAATAAGGATGAAAGAA 177
| || |||| |||| || |||| |||||| | | || ||| ||||||||||||||||||
Sbjct 120 G-ATAGATTATAAAACTCAGAGAATTGATATA-TCTGGTGTTATAATAAGGATGAAAGAA 177
Query 178 CTCTTGAAAGAGCA-CAAAGAGTTACTTTTGGGTTTCAATACCTTCTTGCCAAAGGGTTT 236
||||||||||| || ||| || |||||||||||||||||| ||||||| ||||| ||||
Sbjct 178 CTCTTGAAAGAACAACAAGGA-TTACTTTTGGGTTTCAATGCCTTCTTACCAAATGGTTA 236
Query 237 TAGGATCACACTCCTACCCGATGATCATGAACAACCTTCACATAAGGAACC---CGATTT 293
|| |||||||| | | ||||||||||||||||| ||| |||| ||| ||
Sbjct 237 TATGATCACAC----A-----T---CATGAACAACCTTCACAGAAGAAACCTGTCGAGTT 284
Query 294 TAAGG-ATGCTCTTACTTTTATTA-CAAAGGTTCAGACGAGGTTTCAAGGCG--G-TCGT 348
| || | || ||| |||||||| ||| | || |||| |||||||| |||| | ||||
Sbjct 285 -AGGGGAAGCAATTAGTTTTATTAACAA-GATTAAGACAAGGTTTCAGGGCGATGATCGT 342
Query 349 GCATACAAATCATTTTTAGACATTTTAAGCATCTACAGAAATGAGAGAAATTTAAAGTCC 408
| |||||||||| ||||||||||||||| ||| |||||||| || || || | ||
Sbjct 343 GTATACAAATCAGTTTTAGACATTTTAAACATGTACAGAAAGGATAGGAA------G-CC 395
Query 409 C-TCACC-CAGGTCTAC-GATGAGGTTTCCATCTTATTTCGGGATCATA-CGGATTTGCT 464
| ||||| | ||||||| | |||||| ||||| |||||| ||||||| | |||||||
Sbjct 396 CATCACCGC-GGTCTACCGG-GAGGTTGCCATCCTATTTCTAGATCATAACA-ATTTGCT 452
Query 465 TGCGGAGTTTAATCGCTTTCTGCCTGCAACT 495
|| |||||||| || |||||||||||| |||
Sbjct 453 TGTGGAGTTTACTCACTTTCTGCCTGCTACT 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25870585705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5