BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912289
Length=2433
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24220.1 | Symbols: | paired amphipathic helix repeat-conta... 442 8e-123
AT1G24230.1 | Symbols: | Paired amphipathic helix (PAH2) super... 311 2e-83
AT1G27280.1 | Symbols: | Paired amphipathic helix (PAH2) super... 254 4e-66
AT1G27260.1 | Symbols: | Paired amphipathic helix (PAH2) super... 183 5e-45
AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) super... 147 7e-34
AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) super... 132 2e-29
> AT1G24220.1 | Symbols: | paired amphipathic helix repeat-containing
protein | chr1:8578658-8582413 REVERSE LENGTH=2235
Length=2235
Score = 442 bits (239), Expect = 8e-123
Identities = 405/480 (84%), Gaps = 31/480 (6%)
Strand=Plus/Plus
Query 1137 AACCATTCCTCCTGAGGCGAACAAAGGGTTAAGCCAATTTCAAACCATGGTTGGAAAAAG 1196
|||||| |||||||| |||||||||| |||||| ||| || ||||||| ||||||||||
Sbjct 441 AACCATCCCTCCTGATGCGAACAAAGAGTTAAGGAAATCTCGAACCATGTTTGGAAAAAG 500
Query 1197 TGTACCACCAAAGAAAACTATCAATGATGCATGTTCATACATCTACTCCGTGAAGGAAGC 1256
|||||||| | |||||||| || |||||||| |||||||||| | || |||||||||||
Sbjct 501 TGTACCACTAGAGAAAACTCTCGATGATGCACGTTCATACATAGATTCTGTGAAGGAAGC 560
Query 1257 ATTTCATGATGAACCTGCAAAATATGCCGAGTTTCTCAAGCTCTTGGATGCTTATAGAGC 1316
|||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 561 ATTTCATGATGAGCCTGCAAAATATGCCGAGTTTCTCAAGCTCTTGAATGATTATAAAGC 620
Query 1317 CCGTAGAGTCGATAAAGACAGTGTCATTGCAAG-GTTGGAGGAACTCACGAAAGATCACC 1375
|||||| ||||| || |||||||||||||| || ||| |||||||||||||||||||
Sbjct 621 TCGTAGACTCGATGCCGATAGTGTCATTGCAAGAGT-GGACGAACTCACGAAAGATCACC 679
Query 1376 GGGATCTGCTTCTTGGTTTAAGTGCC-T--TCCTGCCTGCGGCTACAAA-AACAAATCCT 1431
|| ||||||||||||||||||| ||| | ||||||||||||||| || ||||| ||||
Sbjct 680 GGAATCTGCTTCTTGGTTTAAGGGCCATCCTCCTGCCTGCGGCTA-AATCAACAATTCCT 738
Query 1432 CACAAGGCTGATGAGCTAACCAGCCTTCCTGAGGCTAACAGAGCCACCCCTCCCAAGGCT 1491
||||||||| | | | ||| | || ||| | || | |||| |||||
Sbjct 739 CACAAGGCTAAGG-G-TAA--A---------AG---AACCG--CC-CG--TCCCGAGGCT 777
Query 1492 AGCAGAACCATCCCTCTGAAGTTTAAGATAACCATT---CCACCAAAGGCTAGAAGAACC 1548
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 778 AGCAGAACCATCCCTGTGAAGCTTAAGATAACCATTATTCCACCAAAGGCTAGAAGAACC 837
Query 1549 ATCCCTTCTGAGGCTGAGAAACCTACACACTCTGATGAATTGAATTTTATAAACAAGCTT 1608
|||||||| |||||||| |||||||||||| ||||||||||||| ||||| |||||||||
Sbjct 838 ATCCCTTCCGAGGCTGACAAACCTACACACACTGATGAATTGAACTTTATGAACAAGCTT 897
Score = 381 bits (206), Expect = 2e-104
Identities = 378/459 (82%), Gaps = 20/459 (4%)
Strand=Plus/Plus
Query 649 ATGATTGAAAGAAGAGTATCACCGGAACCTACTATGGATGATGCAGTTTCATTCATTGAT 708
||| ||| |||||| ||||||| ||| |||||||||| |||||| ||||||| ||||||
Sbjct 1 ATGGTTGGAAGAAGTGTATCACAGGAGCCTACTATGGCTGATGCTGTTTCATACATTGAA 60
Query 709 TCTGTGAAGGAAGCATTTCACGATGAACCTGCAAAATTTCACGAGTTTA-AA-GCGCTCC 766
||||||||||||| |||||| |||||||||||||||||| ||||||||| || |||||
Sbjct 61 TCTGTGAAGGAAGAATTTCATGATGAACCTGCAAAATTTGACGAGTTTAGAATGCGCT-- 118
Query 767 TGAATGATGTTCGAGATCATAGAGTTGATAACGCTAGTG-TCATTGCAAGAATGAATGAA 825
||||||| ||||| ||| |||||||||| || | ||| | ||| ||||||||| || |||
Sbjct 119 TGAATGAAGTTCGTGATGATAGAGTTGAGAAAGATAG-GATCACTGCAAGAATCAACGAA 177
Query 826 CTCATTAGAGGGTACCCGAAGCTGCTTCGTGGTTCAAGAGTCTTCTTGCCCGAGGCTGAG 885
|| ||||| ||| |||| ||||||| || |||||||| ||||||||| ||||||||||||
Sbjct 178 CTTATTAGTGGGAACCCCAAGCTGCATCTTGGTTCAAAAGTCTTCTTTCCCGAGGCTGAG 237
Query 886 ATAACCATCCCTCCCAAGGCTGAGCAACGCCCTGAGTCTGATGGTGATCAAAA-GAAATG 944
||||||||||||||||||| ||||||||||| |||||||| || || ||||| |||| |
Sbjct 238 ATAACCATCCCTCCCAAGGTTGAGCAACGCCATGAGTCTGTTGATGC-CAAAAAGAAACG 296
Query 945 TGCTGAT-GTAGAGAATCATATGAACAAGCTTGAGACAAG-GC-TTGATACTCTTGTATT 1001
|||| || || |||||||||| ||| ||| | ||| || |||||| |||||||||
Sbjct 297 TGCTAATCGT-GAGAATCATAGGAAGAAGAA-GCTT-AAGTGCCTTGATAGTCTTGTATT 353
Query 1002 TCCGACAATGACTGAAAA-GACTT-ATGAGGG-AAGGAAGTCGATAAAGGAGCTGCACGA 1058
||| ||||||| ||||| || || ||||||| ||| |||||| ||||| || ||||| |
Sbjct 354 TCCCCCAATGAC-GAAAAAGA-TTGATGAGGGGAAG-AAGTCGGTAAAGAAGGTGCACAA 410
Query 1059 GGAGGTAGTCTTTTTATCCGAGGATAAGATAACCATCCC 1097
| || | || | |||||| ||| | | | |||||||||
Sbjct 411 GAAGTTTCTCGTCTTATCCAAGGTTGATAGAACCATCCC 449
Score = 353 bits (191), Expect = 4e-96
Identities = 255/284 (90%), Gaps = 11/284 (4%)
Strand=Plus/Plus
Query 1526 TTCCACCAAAGGCTAGAAGAACCATCCCTTCTGAGGCTGAGAAACCTACACACTCTGATG 1585
||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1058 TTCCAACAAAGGCTAGAAGAACCATCCCTTCCGAGGCTGAGAAACCTACACACACTGATG 1117
Query 1586 AATTGAATTTTATAAACAAGCTTAAGACAAGGTTTCAGAGAATTGATAATCATGTAGTTG 1645
||||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1118 AATTGAACTTTATGAACAAGCTTAAGACAAGGTTTCAGAGAATCGATACTCATGTAGTTG 1177
Query 1646 GGTCATTTCGCTTGATAATGAAAATGTATGAAG-AAGGAAAGAAGTCA-GTAAAGGAGGT 1703
||||||||| || |||||||| ||||||| ||| |||||||||||||| | |||| ||||
Sbjct 1178 GGTCATTTCACTCGATAATGACAATGTAT-AAGGAAGGAAAGAAGTCACGGAAAG-AGGT 1235
Query 1704 GCACGAGGAGGTCTATGATCTTCTCTATTACCATGAAGATCTGATTGAGGACTTCTCCAG 1763
|||||||||||||| ||||||||||||||||||||||||| ||| | ||| ||| ||||
Sbjct 1236 GCACGAGGAGGTCTGTGATCTTCTCTATTACCATGAAGATTTGAGAGCGGATTTCACCAG 1295
Query 1764 AATCTTTCCT------G-ATCCTTTCGCATCAACATCTCTACTA 1800
|||||||||| | ||||||||||||||||||||||||||
Sbjct 1296 AATCTTTCCTAAACTTGGATCCTTTCGCATCAACATCTCTACTA 1339
Score = 154 bits (83), Expect = 4e-36
Identities = 151/180 (84%), Gaps = 19/180 (11%)
Strand=Plus/Plus
Query 2227 GCAAGGTTTCAGGG-TGATGGTGGTCATGTAGTTAACTCAGTTCTCCAGATAATT-AGGA 2284
|||||||||||||| | ||||| ||||||||||||||||||||||||||||| || | |
Sbjct 2029 GCAAGGTTTCAGGGCT-ATGGTAGTCATGTAGTTAACTCAGTTCTCCAGATA-TTGAAAA 2086
Query 2285 TGTACACTATTGAGGGAAACAAGTCCAAAAATGAGGCGTATCATGAGGTAGGGTTCTTGG 2344
|||||| | |||||||||||||||||| ||||||||||||| | | ||| | | |
Sbjct 2087 TGTACAGT---GAGGGAAACAAGTCCAAAGATGAGGCGTATCA-G-G--AGG-T-C--G- 2134
Query 2345 TCGTTGCACTTCTTCAGGGTCATGTAGATTTAATCATGGAGTTTGGCGAATATTTTAGTG 2404
| || ||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||
Sbjct 2135 T--TT-CACTTCTTCAGAATCATGTAGATTTAGTCATGGAGTTTGGCGACTATTTCAGTG 2191
> AT1G24230.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8584039-8585135 REVERSE LENGTH=738
Length=738
Score = 311 bits (168), Expect = 2e-83
Identities = 193/205 (94%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 376 GCTGCGTCTGACAATAACAAAAGAATACGTGTAGCAAATTTCATCACCAAGCTTAAGGCA 435
|||| | |||| ||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 475 GCTGAGCCTGATAATAACAAAAGAATACGTGTAGCAAATTTTATCAGCAAGCTTAAGGCA 534
Query 436 AGGTTCCAGGGGAATGATCGTCATGTATATGAGTCATTTCTCGAGATATTGACAATGTAC 495
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 535 AGGTTCCAGGGGAATGATGGCCATGTATATGAGTCATTTCTCGAGATATTGACAATGTAC 594
Query 496 CAAGAAGGAAACAAGTCCGTGAATGACTTGTACCAGGAGG-TGATTGCACTTCTTCAGGG 554
||| |||||||||| ||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 595 CAACAAGGAAACAAATCCGTAAATGACTTGTACCAGGAGGTTG-TTGCACTTCTTCAGGG 653
Query 555 TCATGAAGATTTAGTCATGGAGTTT 579
|||||||||||||||||||||||||
Sbjct 654 TCATGAAGATTTAGTCATGGAGTTT 678
Score = 254 bits (137), Expect = 4e-66
Identities = 213/248 (86%), Gaps = 12/248 (5%)
Strand=Plus/Plus
Query 1 ATGGTTGGAAGAAGCTTATCACCGGCGTTTACTCTTGATGATGCGAGGTCATTTGTCAAT 60
||||||||| ||||||||||||||||||||||| ||||||| |||| ||||| |||||
Sbjct 1 ATGGTTGGAGGAAGCTTATCACCGGCGTTTACTATTGATGAAGCGACGTCATACATCAAT 60
Query 61 GATGTGAAGGAAGCATTTGGTGCTGATGAAACTGCAAAATATCGAGAGTTTCTCGACATC 120
| |||||||||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 61 GCTGTGAAGGAAGCATTTGGGGCTGATCAACCTGCAAAATATCGAGAGTTTCTCGACATC 120
Query 121 CTGCAGGGTTTAAGAGCTAATAGAATCGATT-ATCCTACTC-TCGTTGCAACGG-TG-GA 176
||| || |||||||||||||||| |||||| | | ||| | ||||| ||| || || |
Sbjct 121 ATGCTGGATTTAAGAGCTAATAGAGTCGATTTAGC-TAC-CGTCGTTCCAA-GGATGCG- 176
Query 177 GGAACTCCTGAAAGATCATCAG-GA-TCTGCTTCTTCGTTTCAATGCCTTCTTTGCAGTT 234
||||||| |||||||||| | | || |||||| |||||||||||||||||| || ||| |
Sbjct 177 GGAACTCTTGAAAGATCA-C-GTGAATCTGCTACTTCGTTTCAATGCCTTCCTTCCAGCT 234
Query 235 GAGCCTAA 242
||| ||||
Sbjct 235 GAGGCTAA 242
> AT1G27280.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:9474027-9474990 FORWARD LENGTH=678
Length=678
Score = 254 bits (137), Expect = 4e-66
Identities = 220/258 (85%), Gaps = 13/258 (5%)
Strand=Plus/Plus
Query 284 TGAAAGGC-CACCCGAATCTGCTTCGT-GGTTTCAGGGTCTTCGTTCCAGCT-AGGTCTA 340
||||| || ||| |||||||||| || |||| | | |||| ||||| || ||| ||
Sbjct 383 TGAAA-GCTCACAAGAATCTGCTT-GTCCGTTTGAATGCCTTCCTTCCACCTGAGG-CT- 438
Query 341 C-GATAA-CCATCGCTTCGACAAAATCTGAGCAACGGGCTGCGTCTGACAATAACAAAAG 398
| || || || || | || ||| || ||||||||||||||| ||||| | |||||||||
Sbjct 439 CAGAGAATCC-TC-CATC-TCAAGAT-TGAGCAACGGGCTGCATCTGATATTAACAAAAG 494
Query 399 AATACGTGTAGCAAATTTCATCACCAAGCTTAAGGCAAGGTTCCAGGGGAATGATCGTCA 458
|| ||||||||| | ||| ||| ||||||||||| ||||||||||||| ||||||||||
Sbjct 495 AAAACGTGTAGCGAGTTTTATCGGCAAGCTTAAGGAAAGGTTCCAGGGGGATGATCGTCA 554
Query 459 TGTATATGAGTCATTTCTCGAGATATTGACAATGTACCAAGAAGGAAACAAGTCCGTGAA 518
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TGTATATGAGTCGTTTCTCGAGATATTGACAATGTACCAAGAAGGAAACAAGTCCGTGAA 614
Query 519 TGACTTGTACCAGGAGGT 536
||||||||||||||||||
Sbjct 615 TGACTTGTACCAGGAGGT 632
Score = 108 bits (58), Expect = 3e-22
Identities = 124/156 (79%), Gaps = 4/156 (3%)
Strand=Plus/Plus
Query 1148 CTGAGGCGAACAAAGGGTTAAG-CCAATTTCAAACCATGGTTGGAAAAAGTGTACCACCA 1206
||||||| | | ||||||| || |||| |||||||||| | || || ||| ||| ||||
Sbjct 167 CTGAGGCTAGCGAAGGGTT-AGCCCAACTTCAAACCATTGCTGCAACAAGCGTATCACCG 225
Query 1207 AAGAAAACTATCAATGATGCATG-TTCATACATCTACTCCGTGAAGGAAGCATTTCATGA 1265
| ||||| ||||||| | |||||||||| || | || |||||||||||||||||
Sbjct 226 GATTCTACTATTGATGATGC-GGTTTCATACATCAACACTGTCAAGGAAGCATTTCATGA 284
Query 1266 TGAACCTGCAAAATATGCCGAGTTTCTCAAGCTCTT 1301
|||||||||||| ||| ||||||| || |||||||
Sbjct 285 TGAACCTGCAAAGTATTACGAGTTTTTCCAGCTCTT 320
> AT1G27260.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:9469948-9470967 FORWARD LENGTH=669
Length=669
Score = 183 bits (99), Expect = 5e-45
Identities = 195/240 (81%), Gaps = 12/240 (5%)
Strand=Plus/Plus
Query 1173 ATTTCAAACCATGGTTGGAAAAAGTGTACCACCAAAGAAAACTATCAATGATGC-ATGTT 1231
|||||||| | ||||||||| ||| |||||||| ||| ||||||| | ||||| | ||
Sbjct 228 ATTTCAAAACGTGGTTGGAAGAAGCGTACCACCGGAGACAACTATCGAGGATGCGA-CTT 286
Query 1232 CATACATCTACTCCGTGAAGGA-AGCATTTCATGATGAACCTGCAAAATATGCCGAGTTT 1290
||||| || |||| ||||| || ||||||||||||||||||||||||||||| || ||
Sbjct 287 CATACCTCAACTCTGTGAA-GAGAGCATTTCATGATGAACCTGCAAAATATGAGGAACTT 345
Query 1291 CTCAAGCTCTTGGATGCTTATAGA-GCCCGTAGAGTCGATAAAGAC-AGTGTCATTGCAA 1348
|| ||||||||| ||| | || || || |||||||||||| | | ||| |||||||||
Sbjct 346 CTTAAGCTCTTGAATGAT-ATTGAAGCTCGTAGAGTCGATGCTG-CTAGTTTCATTGCAA 403
Query 1349 G-GTTGGAGGAACTCACGAAAGATCACCGGGA-TCTGCTTCTTGGTTTAAGTGCCTTCCT 1406
| || ||| ||||||| ||||||||||| | | ||||||| |||||| |||| ||||||
Sbjct 404 GTGT-GGAAGAACTCATGAAAGATCACCAG-ACTCTGCTTAATGGTTTCAGTGTCTTCCT 461
> AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8417495-8418566 FORWARD LENGTH=726
Length=726
Score = 147 bits (79), Expect = 7e-34
Identities = 155/191 (81%), Gaps = 8/191 (4%)
Strand=Plus/Plus
Query 1220 ATGATGC-ATGTTCATACATCTACT-CCGTGAAGGAAGCATTTCATGATGAACCTGCAAA 1277
||||||| | ||||||| || | | | ||||||||||||||||||||||||||||||||
Sbjct 323 ATGATGCGA-CTTCATACCTC-ATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAA 380
Query 1278 ATATGCCGAGTTTCTCAAGCTCTTGGATGCTTATAGAGCCCGTAGAGTCGATAAAGAC-A 1336
||||| || | || ||||||||| ||| || || ||| || |||||| || | | |
Sbjct 381 ATATGAGGAAATGCTTAAGCTCTTGAATGATTTTAAAGCTCGCAGAGTCAATGCCG-CTA 439
Query 1337 GTGTCATTGCAAGGTTGGAGGAACTCACGAAAGATCAC-CGGGATCTGCTTCTTGGTTTA 1395
|||||||||| ||| |||||||||||| |||||||||| || |||||||| |||||||
Sbjct 440 GTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTCGA-ATCTGCTTTTTGGTTTC 498
Query 1396 AGTGCCTTCCT 1406
||| ||||||
Sbjct 499 TGTGTCTTCCT 509
> AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:9472077-9473149 FORWARD LENGTH=726
Length=726
Score = 132 bits (71), Expect = 2e-29
Identities = 136/166 (82%), Gaps = 10/166 (6%)
Strand=Plus/Plus
Query 1246 GTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGCCGAGTTT-CTCAAGCTCTTG-- 1302
|||||||||||||||||||||||||||||||||||| || || || |||||||||
Sbjct 361 GTGAAGGAAGCATTTCATGATGAACCTGCAAAATATATGGAAATTACT-AAGCTCTTGAC 419
Query 1303 -GATGCTTATAGAGCCCGTAGAGTCGATAAAGAC-AGTGTCATTGCAAGGTTGGAGGAAC 1360
||| |||| | ||| |||||| || || | | ||||||||||||||| |||||||||
Sbjct 420 TGAT-CTTA-A-AGCTCGTAGAATCAATGCCG-CTAGTGTCATTGCAAGGATGGAGGAAC 475
Query 1361 TCACGAAAGATCACCGGGATCTGCTTCTTGGTTTAAGTGCCTTCCT 1406
|| |||||||||| | |||||||||||||||| ||| ||||||
Sbjct 476 TCTTGAAAGATCACTTGAATCTGCTTCTTGGTTTCTGTGTCTTCCT 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120832711815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5