BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912291

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27250.1 | Symbols:  | Paired amphipathic helix (PAH2) super...   134    4e-31


> AT1G27250.1 | Symbols:  | Paired amphipathic helix (PAH2) superfamily 
protein | chr1:9468568-9469634 FORWARD LENGTH=414
Length=414

 Score =  134 bits (72),  Expect = 4e-31
 Identities = 80/84 (95%), Gaps = 0/84 (0%)
 Strand=Plus/Plus

Query  1   ATGGTGGGAGGAGGAAGTAAACATGTTGGAGAAGGAAGTAAACCGAAGGCAAATATAGAT  60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct  1   ATGGTGGGAGGAGGAAGTAAACATGTTGGAGAAGGAAGTAAACCGAGGGCAACTAAAGAT  60

Query  61  GATGCGTATGCATATCTTAGGGCT  84
           || |||||||||||||||||||||
Sbjct  61  GACGCGTATGCATATCTTAGGGCT  84



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10103817549


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5