BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912297

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G55430.1 | Symbols:  | O-Glycosyl hydrolases family 17 prote...   505    1e-142


> AT3G55430.1 | Symbols:  | O-Glycosyl hydrolases family 17 protein 
| chr3:20549599-20552215 REVERSE LENGTH=1768
Length=1768

 Score =  505 bits (273),  Expect = 1e-142
 Identities = 316/337 (94%), Gaps = 2/337 (1%)
 Strand=Plus/Plus

Query  1    AACCTTCCACCACCGACTCAAGTGGC-AAATTTCATCAAGACTCAAACTTCGATCGATAG  59
            ||||| |||||||||||||| ||||| || ||| |||||||| ||||||||||| |||||
Sbjct  323  AACCTCCCACCACCGACTCAGGTGGCTAACTTT-ATCAAGACACAAACTTCGATTGATAG  381

Query  60   CGTCAAGATCTTCGATGTGAATCCCGATATCCTCCGTGCTTTTGCTGGAACTGGTATCTC  119
            ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct  382  CGTCAAGATCTTCGATGTGAATCCCGATATCCTACGTGCCTTCGCTGGAACTGGTATCTC  441

Query  120  CGTCGTCGTTACCGTTCCTAACGGTGATATTCCGGCGTTAGCTAACGGAAGACAAGCTCG  179
            |||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  442  CGTCGTTGTCACCGTTCCTAACGGTGATATTCCGGCGTTGGCTAACGGAAGACAAGCTCG  501

Query  180  TCGGTGGGTTTCAGCTAACATTTTGCCGTTTCATCCTCAGACGAAGATTAAGTATATCTC  239
            |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  502  TCGGTGGGTTTCGGTTAACATTTTGCCGTTTCATCCTCAGACGAAGATTAAGTATATCTC  561

Query  240  TGTCGGGAATGAGATTTTGCTCACCGGAGATAATAACATGATTAACAATCTCTTACCGGC  299
             ||||| ||||||||| ||||||||||||||||||||||||| || ||||||||||||||
Sbjct  562  AGTCGGAAATGAGATTCTGCTCACCGGAGATAATAACATGATCAATAATCTCTTACCGGC  621

Query  300  GATGAGGAATCTTAACAATGCTTTGGTTCGTGCTGGT  336
            |||||||||||||||||| ||||||||||||||||||
Sbjct  622  GATGAGGAATCTTAACAACGCTTTGGTTCGTGCTGGT  658



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5