BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912299

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27220.1 | Symbols:  | paired amphipathic helix repeat-conta...   351    1e-96


> AT1G27220.1 | Symbols:  | paired amphipathic helix repeat-containing 
protein | chr1:9463806-9465444 FORWARD LENGTH=555
Length=555

 Score =  351 bits (190),  Expect = 1e-96
 Identities = 242/267 (91%), Gaps = 4/267 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTGGAGAAGGTAGTAAACCGAAGGCAACCA-TAGATGACGCATATGCATACCTTAG  59
            ||||| |||||||| |||||||||||||||| || ||||||| |||||||||||| ||||
Sbjct  1    ATGGCGGGAGAAGGAAGTAAACCGAAGGCAA-CAGTAGATGATGCATATGCATACATTAG  59

Query  60   GACTGTTAAGAGTACATTTCATAATGATCGTGATAAATATGAAGACTTTATCGTGATCAT  119
            ||||||||||||||| ||||||||||||| |||||||||||| |||||||| | ||||||
Sbjct  60   GACTGTTAAGAGTACCTTTCATAATGATCCTGATAAATATGACGACTTTATGGCGATCAT  119

Query  120  GAACAATTTTAAAGCTCG-GAACTTTACAAGGAATGCTTGCATAGAAGAGGTAAAGGATC  178
            ||| ||||||||||||||  || || |  || ||| ||||||||||||||||||| || |
Sbjct  120  GAAAAATTTTAAAGCTCGCAAAATTGA-TAGAAATACTTGCATAGAAGAGGTAAAAGAAC  178

Query  179  TGCTTAAAGGACATCGAGACTTGATCTCTGGTTTCAATGCATTTTTGCCAAAGTGTTTGG  238
            ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  179  TGCTTAAAGGACATCGAGACTTGATATCGGGTTTCAATGCATTTTTGCCAAAGTGTTTGG  238

Query  239  AGATCGCTGATTGGTACAACTTAGAGG  265
            |||||||||||||||||||| ||||||
Sbjct  239  AGATCGCTGATTGGTACAACATAGAGG  265



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12516669501


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5